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Ginkgo config solver #272

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24 changes: 9 additions & 15 deletions cmake/CxxThirdParty.cmake
Original file line number Diff line number Diff line change
Expand Up @@ -109,28 +109,22 @@ cpmaddpackage(
SYSTEM)

if(${NEOFOAM_WITH_GINKGO})
set(GINKGO_BUILD_TESTS
OFF
CACHE INTERNAL "")
set(GINKGO_BUILD_BENCHMARKS
OFF
CACHE INTERNAL "")
set(GINKGO_BUILD_EXAMPLES
OFF
CACHE INTERNAL "")
set(GINKGO_BUILD_MPI
OFF
CACHE INTERNAL "")
set(GINKGO_ENABLE_HALF
OFF
CACHE INTERNAL "")
cpmaddpackage(
NAME
Ginkgo
VERSION
1.10.0
GITHUB_REPOSITORY
ginkgo-project/ginkgo
GIT_TAG
develop
OPTIONS
"GINKGO_BUILD_TESTS OFF"
"GINKGO_BUILD_BENCHMARKS OFF"
"GINKGO_BUILD_EXAMPLES OFF"
"GINKGO_BUILD_MPI ${NEOFOAM_ENABLE_MPI_SUPPORT}"
"GINKGO_BUILD_CUDA ${Kokkos_ENABLE_CUDA}"
"GINKGO_BUILD_HIP ${Kokkos_ENABLE_HIP}"
SYSTEM)
endif()

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4 changes: 2 additions & 2 deletions include/NeoFOAM/core/dictionary.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,7 @@ class Dictionary
catch (const std::bad_any_cast& e)
{
logBadAnyCast<T>(e, key, data_);
throw e;
throw;
}
}

Expand All @@ -117,7 +117,7 @@ class Dictionary
catch (const std::bad_any_cast& e)
{
logBadAnyCast<T>(e, key, data_);
throw e;
throw;
}
}

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3 changes: 1 addition & 2 deletions include/NeoFOAM/dsl/solver.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -112,7 +112,7 @@
[[maybe_unused]] const Dictionary& fvSolution
)
{
// FIXME:

Check failure on line 115 in include/NeoFOAM/dsl/solver.hpp

View workflow job for this annotation

GitHub Actions / FIXME check

// FIXME:
if (exp.temporalOperators().size() == 0 && exp.spatialOperators().size() == 0)
{
NF_ERROR_EXIT("No temporal or implicit terms to solve.");
Expand All @@ -132,8 +132,7 @@
using ValueType = typename FieldType::ElementType;
auto ls = ginkgoMatrix(exp, solution);


NeoFOAM::la::ginkgo::BiCGStab<ValueType> solver(solution.exec(), fvSolution);
NeoFOAM::la::ginkgo::Solver<ValueType> solver(solution.exec(), fvSolution);
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line 116-119 format seems to be incorrect

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clang format seems to be fine with it.

solver.solve(ls, solution.internalField());
}
}
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92 changes: 18 additions & 74 deletions include/NeoFOAM/linearAlgebra/ginkgo.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -17,98 +17,42 @@
namespace NeoFOAM::la::ginkgo
{

gko::config::pnode parse(const Dictionary& dict);

template<typename ValueType>
class GkoSolverBase
class Solver
{

private:

std::shared_ptr<const gko::Executor> gkoExec_;
Dictionary solverDict_;

virtual std::shared_ptr<gko::LinOp> solverGen(
std::shared_ptr<const gko::Executor> exec,
std::shared_ptr<const gko::LinOp> mtx,
size_t maxIter,
float relTol
) = 0;

protected:
public:

GkoSolverBase(Executor exec, Dictionary solverDict)
: gkoExec_(getGkoExecutor(exec)), solverDict_(solverDict)
Solver(Executor exec, Dictionary solverConfig)
: gkoExec_(getGkoExecutor(exec)), config_(parse(solverConfig)),
factory_(
gko::config::parse(
config_, gko::config::registry(), gko::config::make_type_descriptor<ValueType>()
)
.on(gkoExec_)
)
{}

public:

virtual void solve(LinearSystem<ValueType, int>& sys, Field<ValueType>& x)
void solve(LinearSystem<ValueType, int>& sys, Field<ValueType>& x)
{
size_t nrows = sys.rhs().size();

auto solver = solverGen(
gkoExec_,
detail::createGkoMtx(gkoExec_, sys),
size_t(solverDict_.get<int>("maxIters")),
float(solverDict_.get<double>("relTol"))
);
auto solver = factory_->generate(detail::createGkoMtx(gkoExec_, sys));

auto rhs = detail::createGkoDense(gkoExec_, sys.rhs().data(), nrows);
auto gkoX = detail::createGkoDense(gkoExec_, x.data(), nrows);
solver->apply(rhs, gkoX);
}
};


template<typename ValueType>
class CG : public GkoSolverBase<ValueType>
{

virtual std::shared_ptr<gko::LinOp> solverGen(
std::shared_ptr<const gko::Executor> exec,
std::shared_ptr<const gko::LinOp> mtx,
size_t maxIter,
float relTol
) override
{
auto fact =
gko::solver::Bicgstab<ValueType>::build()
.with_criteria(
gko::stop::Iteration::build().with_max_iters(maxIter),
gko::stop::ResidualNorm<ValueType>::build().with_reduction_factor(relTol)
)
.on(exec);
return fact->generate(mtx);
}

public:
private:

CG(Executor exec, Dictionary solverDict) : GkoSolverBase<ValueType>(exec, solverDict) {}
std::shared_ptr<const gko::Executor> gkoExec_;
gko::config::pnode config_;
std::shared_ptr<const gko::LinOpFactory> factory_;
};

template<typename ValueType>
class BiCGStab : public GkoSolverBase<ValueType>
{
virtual std::shared_ptr<gko::LinOp> solverGen(
std::shared_ptr<const gko::Executor> exec,
std::shared_ptr<const gko::LinOp> mtx,
size_t maxIter,
float relTol
)
{
auto fact =
gko::solver::Bicgstab<ValueType>::build()
.with_criteria(
gko::stop::Iteration::build().with_max_iters(maxIter),
gko::stop::ResidualNorm<ValueType>::build().with_reduction_factor(relTol)
)
.on(exec);
return fact->generate(mtx);
}

public:

BiCGStab(Executor exec, Dictionary solverDict) : GkoSolverBase<ValueType>(exec, solverDict) {}
};

}

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28 changes: 21 additions & 7 deletions include/NeoFOAM/linearAlgebra/utilities.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -18,19 +18,33 @@ std::shared_ptr<gko::Executor> getGkoExecutor(Executor exec);

namespace detail
{

template<typename T>
gko::array<T> createGkoArray(std::shared_ptr<const gko::Executor> exec, std::span<T> values)
{
return gko::make_array_view(exec, values.size(), values.data());
}

template<typename T>
gko::detail::const_array_view<T>
createGkoArray(std::shared_ptr<const gko::Executor> exec, std::span<const T> values)
{
return gko::make_const_array_view(exec, values.size(), values.data());
}

template<typename ValueType, typename IndexType>
std::shared_ptr<gko::matrix::Csr<ValueType, IndexType>>
createGkoMtx(std::shared_ptr<const gko::Executor> exec, LinearSystem<ValueType, IndexType>& sys)
{
auto& mtx = sys.matrix();
size_t nrows = sys.rhs().size();

auto valuesView = gko::array<scalar>::view(exec, mtx.values().size(), mtx.values().data());
auto colIdxView = gko::array<int>::view(exec, mtx.colIdxs().size(), mtx.colIdxs().data());
auto rowPtrView = gko::array<int>::view(exec, mtx.rowPtrs().size(), mtx.rowPtrs().data());

return gko::share(gko::matrix::Csr<scalar, int>::create(
exec, gko::dim<2> {nrows, nrows}, valuesView, colIdxView, rowPtrView
return gko::share(gko::matrix::Csr<ValueType, IndexType>::create(
exec,
gko::dim<2> {nrows, nrows},
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nit: nrows from mtx.nRows() not from rhs?

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For now the matrices are assumed to be square. I think this will also stay like this for quite a while.

createGkoArray(exec, mtx.values()),
createGkoArray(exec, mtx.colIdxs()),
createGkoArray(exec, mtx.rowPtrs())
));
}

Expand All @@ -39,7 +53,7 @@ std::shared_ptr<gko::matrix::Dense<ValueType>>
createGkoDense(std::shared_ptr<const gko::Executor> exec, ValueType* ptr, size_t size)
{
return gko::share(gko::matrix::Dense<ValueType>::create(
exec, gko::dim<2> {size, 1}, gko::array<scalar>::view(exec, size, ptr), 1
exec, gko::dim<2> {size, 1}, createGkoArray(exec, std::span {ptr, size}), 1
));
}
}
Expand Down
2 changes: 1 addition & 1 deletion include/NeoFOAM/timeIntegration/backwardEuler.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ class BackwardEuler :
auto ginkgoLs = NeoFOAM::dsl::ginkgoMatrix(ls, solutionField);


NeoFOAM::la::ginkgo::BiCGStab<ValueType> solver(solutionField.exec(), this->solutionDict_);
NeoFOAM::la::ginkgo::Solver<ValueType> solver(solutionField.exec(), this->solutionDict_);
solver.solve(ginkgoLs, solutionField.internalField());

// check if executor is GPU
Expand Down
3 changes: 1 addition & 2 deletions src/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,6 @@ add_library(NeoFOAM ${NeoFOAM_LIB_TYPE})

include(GNUInstallDirs)

target_sources(NeoFOAM PRIVATE ${NeoFOAM_SRCS})

if(NEOFOAM_ENABLE_CUDA)
set_source_files_properties(${NeoFOAM_SRCS} PROPERTIES LANGUAGE CUDA)
endif()
Expand All @@ -28,6 +26,7 @@ target_sources(
"executor/CPUExecutor.cpp"
"executor/GPUExecutor.cpp"
"executor/serialExecutor.cpp"
"linearAlgebra/ginkgo.cpp"
"linearAlgebra/utilities.cpp"
"mesh/unstructured/boundaryMesh.cpp"
"mesh/unstructured/unstructuredMesh.cpp"
Expand Down
66 changes: 66 additions & 0 deletions src/linearAlgebra/ginkgo.cpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,66 @@
// SPDX-FileCopyrightText: 2025 NeoFOAM authors
//
// SPDX-License-Identifier: MIT

#include "NeoFOAM/linearAlgebra/ginkgo.hpp"

gko::config::pnode NeoFOAM::la::ginkgo::parse(const Dictionary& dict)
{
auto parseData = [&](auto key)
{
auto parseAny = [&](auto blueprint)
{
using value_type = decltype(blueprint);
if (dict[key].type() == typeid(value_type))
{
return gko::config::pnode(dict.get<value_type>(key));
}
else
{
return gko::config::pnode();
}
};

if (auto node = parseAny(std::string()))
{
return node;
}
if (auto node = parseAny(static_cast<const char*>(nullptr)))
{
return node;
}
if (auto node = parseAny(int {}))
{
return node;
}
if (auto node = parseAny(static_cast<unsigned int>(0)))
{
return node;
}
if (auto node = parseAny(double {}))
{
return node;
}
if (auto node = parseAny(float {}))
{
return node;
}

NF_THROW("Dictionary key " + key + " has unsupported type: " + dict[key].type().name());
};
gko::config::pnode::map_type result;
for (const auto& key : dict.keys())
{
gko::config::pnode node;
if (dict.isDict(key))
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doesn't Dictionary support Array?
like "value": [1, 2, 3]?

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It's unclear ATM. Since the dictionary just stores an std::any, it could also store vectors, but checking for vectors would require to check std::vector<int>, std::vector<double>, ...

{
node = parse(dict.subDict(key));
}
else
{
node = parseData(key);
}
result.emplace(key, node);
}
return gko::config::pnode {result};
}
18 changes: 10 additions & 8 deletions test/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -22,30 +22,32 @@ function(neofoam_unit_test TEST)
set(neofoam_WORKING_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/tests)
endif()
if(NOT DEFINED "neofoam_COMMAND")
set(neofoam_COMMAND ${TEST})
set(neofoam_COMMAND nf_${TEST})
endif()

add_executable(${TEST} "${TEST}.cpp")
target_link_libraries(${TEST} PRIVATE neofoam_catch_main neofoam_warnings neofoam_options
Kokkos::kokkos NeoFOAM cpptrace::cpptrace)
add_executable(${neofoam_COMMAND} "${TEST}.cpp")
set_target_properties(${neofoam_COMMAND} PROPERTIES OUTPUT_NAME ${TEST})
target_link_libraries(
${neofoam_COMMAND} PRIVATE neofoam_catch_main neofoam_warnings neofoam_options Kokkos::kokkos
NeoFOAM cpptrace::cpptrace)

if(NEOFOAM_WITH_SUNDIALS)
target_link_libraries(${TEST} PRIVATE SUNDIALS::arkode)
target_link_libraries(${neofoam_COMMAND} PRIVATE SUNDIALS::arkode)
endif()
if(WIN32)
set_target_properties(
${TEST}
${neofoam_COMMAND}
PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${neofoam_WORKING_DIRECTORY}/$<0:>
LIBRARY_OUTPUT_DIRECTORY ${neofoam_WORKING_DIRECTORY}/$<0:>
ARCHIVE_OUTPUT_DIRECTORY ${neofoam_WORKING_DIRECTORY}/$<0:>)
else()
set_target_properties(${TEST} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${neofoam_WORKING_DIRECTORY})
set_target_properties(${neofoam_COMMAND} PROPERTIES RUNTIME_OUTPUT_DIRECTORY
${neofoam_WORKING_DIRECTORY})
endif()
add_test(
NAME ${TEST}
COMMAND ${neofoam_COMMAND}
WORKING_DIRECTORY ${neofoam_WORKING_DIRECTORY})

endfunction()

function(neofoam_unit_test_mpi TEST)
Expand Down
1 change: 1 addition & 0 deletions test/linearAlgebra/CMakeLists.txt
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
# SPDX-License-Identifier: Unlicense
# SPDX-FileCopyrightText: 2024 NeoFOAM authors

neofoam_unit_test(ginkgo)
neofoam_unit_test(linearSystem)
neofoam_unit_test(linearAlgebra)
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