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use the separate package for snakemake_invoke #229

use the separate package for snakemake_invoke

use the separate package for snakemake_invoke #229

Workflow file for this run

name: PR Checks
on:
push:
branches: [main, dev]
pull_request:
branches: [main, dev]
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
jobs:
unit_tests:
name: Unit Tests
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Install nox
shell: bash
run: pip install nox[uv]
- name: Run unit tests
run: nox
# TODO add this later with synthetic or shared test data
#system_tests:
# name: System Tests
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - name: Set up Python
# uses: actions/setup-python@v5
# with:
# python-version: 3.12
# - name: Install nox
# shell: bash
# run: pip install nox[uv]
# - name: Run system tests
# run: nox -s system_tests