fix installation problems

fgcz · Oct 23, 2024 · 12320fb · 12320fb
1 parent fd98f63
commit 12320fb
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Showing 3 changed files with 7 additions and 4 deletions.
diff --git a/.gitignore b/.gitignore
@@ -9,6 +9,7 @@
 .task
 .venv
 .vscode
+.python-version
 dist
 __pycache__
 

diff --git a/README.md b/README.md
@@ -13,22 +13,24 @@ This project is in an early state of development. If you are interested, it's be
 
 ## Setup dev environment
 
+Currently, Python 3.12 is required, 3.13 is not compatible yet (missing wheels and e.g. llvmlite).
+
 ### Using `uv` (recommended)
 
 Install the `pyproject.toml` in editable mode, tested with
 [uv](https://github.com/astral-sh/uv):
 
 ```bash
 uv venv
-uv pip install -e ".[dev,testing]"
+uv pip install -e ".[dev]"
 ```
 
 ### Using `conda`
 
 ```bash
 conda create -n exp-2024-05-depiction python=3.11
 conda activate exp-2024-05-depiction
-pip install -e ".[dev,testing]"
+pip install -e ".[dev]"
 ```
 
 ## Geometry Conventions

diff --git a/pyproject.toml b/pyproject.toml
@@ -7,7 +7,6 @@ readme = "README.md"
 license = { text = "Apache-2.0" }
 
 dependencies = [
-    "setuptools",
     "alphapept>=0.5.2",
     # TODO investigate
     "altair<5.4.0",
@@ -62,6 +61,7 @@ testing = [
     "pytest-mock"
 ]
 dev = [
+    "depiction[testing]",
     "bokeh>=3.3.2",
     "hvplot>=0.9.0",
     "jupyterlab>=4.0.9",
@@ -73,7 +73,7 @@ dev = [
     "licensecheck",
     "hdbscan",
     "nox[uv]",
-    "spatialdata",
+    "spatialdata>=0.2.3",
     "spatialdata-plot>=0.2.1",
     "types-tqdm",
     "rpy2",
-Original file line number
+Diff line change
@@ Expand Up / @@ -9,6 +9,7 @@ @@
     .task
     .venv
     .vscode
+    .python-version
     dist
     __pycache__
@@ Expand Down @@