new script for standardizing tables

src/depiction_targeted_preproc/workflow/panel/standardize_panel.py

@@ -0,0 +1,31 @@
+import cyclopts
+import polars as pl
+from pathlib import Path
+from rich.pretty import pprint
+
+from depiction_targeted_preproc.panel.schema import PanelMainSchema
+from depiction_targeted_preproc.panel.standardize_input_panel import StandardizeConfig, standardize
+
+app = cyclopts.App()
+
+
+def _standardize(input_panel_path: Path, config_name: str) -> pl.DataFrame:
+    input_df = pl.read_csv(input_panel_path)
+    config = StandardizeConfig.load_packaged(config_name)
+    return standardize(config=config, raw_df=input_df)
+
+
+def _validate(output_df: pl.DataFrame) -> None:
+    results = PanelMainSchema.validate(output_df)
+    pprint(results)
+
+
+@app.default
+def standardize_panel(input_panel_path: Path, config_name: str, output_panel_path: Path) -> None:
+    output_df = _standardize(input_panel_path=input_panel_path, config_name=config_name)
+    _validate(output_df=output_df)
+    output_df.write_csv(output_panel_path)
+
+
+if __name__ == "__main__":
+    app()