make snakefile configurable

fgcz · Jun 20, 2024 · e531930 · e531930
1 parent b1ef78d
commit e531930
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/depiction_targeted_preproc/workflow/snakemake_invoke.py b/src/depiction_targeted_preproc/workflow/snakemake_invoke.py
@@ -9,6 +9,7 @@
 
 @dataclass
 class SnakemakeInvoke:
+    snakefile_name: str = "Snakefile"
     use_subprocess: bool = True
     continue_on_error: bool = False
 
@@ -20,7 +21,7 @@ def invoke(self, work_dir: Path, result_files: list[Path], n_cores: int = 1) ->
 
     @property
     def snakefile_path(self) -> Path:
-        return Path(__file__).parents[1] / "workflow" / "experimental.smk"
+        return Path(__file__).parents[1] / "workflow" / self.snakefile_name
 
     @property
     def workflow_dir(self) -> Path: