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Python 3 and Docker instructions
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crosenth committed Mar 4, 2022
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18 changes: 14 additions & 4 deletions README.rst
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Expand Up @@ -12,9 +12,13 @@ The Easy Way

* confirm availability of necessary libraries to compile dependencies
(on Ubuntu: ``sudo apt-get install gfortran libopenblas-dev liblapack-dev``)
* Install Python 2.7
* run `bin/bootstrap.sh`
* run `source bin-env/bin/activate`
* Install Python >= 3.8 or Python 3 Virtual Environment
::

% python3 -m venv bin-env
% source bin-env/bin/activate
% bin/bootstrap.sh


the `deenurp` executable should now be on your `$PATH`

Expand All @@ -25,7 +29,7 @@ See required system libraries above.

First, install binary dependencies:

* Python 2.7
* Python 3

- pip, for installing python dependencies (http://www.pip-installer.org/)
- Python packages:
Expand All @@ -46,6 +50,12 @@ Finally, install::

python setup.py install

The Docker Way
==============

Deenurp can be run from a Docker image which can be built locally from a Dockerfile
or pulled ``docker pull nghoffman/deenurp:v0.3.0``

De-novo reference set creation
==============================

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