04 infernal1.1 #7
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- save test output in output directories (to more easily ignore them)
- add CHANGES.txt - add bin/bootstrap.py (installs all dependencies in a virtualenv) - update url for tax2tree
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@nhoffman: would it be possible to default to 1 CPU? Parallelism in deenurp is at the species/OTU level, so using all CPUs by default will conflict with the argument to |
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@cmccoy - defaulted cmalign to 1 cpu as you suggested. |
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Merged, thanks! |
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Untested with MPI - we may still want to remove MPI support rather than worry about it. Also, cmalign 1.1 uses all available cores unless a smaller number is specified. We may want to limit that either optionally or by default.