Methods for feature detection in 1D and 2 D qTOF MS data.
Command line tools shipped with this package:
- PeakPicker qtof - peak picking in qTOF data
- findMF - feature finding in LCMS qTOF data (also mzML/mzXML file containing many maps)
- conv2Image - generate Images, and optionally apply filtering to LCMS qTOF data
- filterSingleMap - chemical noise removal in LCMS maps (in mzML out mzML with chemical noise removed)
- filterQTView - allows to visualize intermediate processing steps
Read the very brief Article describing the design decisions and concepts of findMF.
For usage examples see checkSubmodule.sh
To find out more run the tools with the --help option.
See also project findMFBase which is a header only library implementing a lot of functions required by this project.
For how to build this project please refer to the .travis.yml file in the root directory of the project and to the *.sh files in the buildscripts folder refered to from the .travis.yml file.