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Adam Kimbler edited this page Jul 20, 2017 · 29 revisions

Welcome to the madlab_resources wiki!

Toggle table of contents Pages 20

Home
binary_roi_files
Conducting a Power Test in Neuropower
DICOM Conversion
DWI
EV creation
First Level Analysis
Freesurfer Recon_all Quality Assurance and Resubmission
IRB Protocols
Lab Equipment
LSF Scheduler Jobs and Queues
Miniconda Environments
Moving DICOMS to HPC
New Research Assistant Instructions
Open Remote Jupyter Notebook
Preprocessing
R Statistical Programming
Room Reservations
Sona Instructions
test

Administrative Information

New Research Assistant Instructions
Room Reservations
Sona Instructions
IRB Protocols
Lab Equipment

Steps for MRI Data Analysis

Moving DICOMs to HPC
DICOM Conversion
Freesurfer Recon_All, Quality Assurance, and Resubmission
Preprocessing
Normalization To Be Completed
Creation of EV Files
First Level Analysis
Second Level Analysis To Be Completed
Group Level Analysis To Be Completed
DWI To Be Completed

Additional Data Analyses

Creating Binarized ROI Files in AFNI

Useful Information

LSF Scheduler, Jobs, and Queues
Open Remote Jupyter Notebook
R Statistical Programming Language
Setting up Miniconda Environments
Creating a New Github Repository
Adding Files to a Github Repository
Syncing a Github Fork

Current Projects

CMIND
EMU
WMAZE
LOSSAVER
SEQTRD
TOLERANCE

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