-inclusion of BEAUTI/BEAST xml files to calculate evolutionary rates for the cattle only clade
-inclusion of additional SNV tables (Data S6 and Data S7).
Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle
Thao-Quyen Nguyen, Carl R. Hutter, Alexey Markin, Megan Thomas, Kristina Lantz, Mary Lea Killian, Garrett M. Janzen, Sriram Vijendran, Sanket Wagle, Blake Inderski, Drew R. Magstadt, Ganwu Li, Diego G. Diel, Elisha Anna Frye, Kiril M. Dimitrov, Amy K. Swinford, Alexis C. Thompson, Kevin R. Snekvik, David L. Suarez, Steven M. Lakin, Stacey Schwabenlander, Sara C. Ahola, Kammy R. Johnson, Amy L. Baker, Suelee Robbe-Austerman, Mia Kim Torchetti, Tavis K. Anderson. bioRxiv 2024.05.01.591751; doi: https://doi.org/10.1101/2024.05.01.591751