biostuff

Computational biology packages for Go, with emphasis on minimialism.

go get github.com/fluhus/biostuff/...

Package Overview

Data formats
- bed
- fasta
- fastq
- newick
- sam
Algorithms & data structures
- align sequence alignment logic
- mash implementation of Mash distance
- rarefy rarefaction by read count
- regions an index for interval (genes, etc.) overlap lookup
- trie a prefix tree for sequence lookups
Nucleotide & amino-acid sequence utilities
- sequtil

Help or Get Help

Found a bug? Got feedback? Questions? Feel free to open an issue and let me know!