biostuff

Computational biology packages for Go, with emphasis on minimialism.

go get github.com/fluhus/biostuff/...

Package Overview

• Data formats
  • bed
  • fasta
  • fastq
  • newick
  • sam
• Algorithms & data structures
  • align sequence alignment logic
  • mash implementation of Mash distance
  • rarefy rarefaction by read count
  • regions an index for interval (genes, etc.) overlap lookup
  • trie a prefix tree for sequence lookups
• Nucleotide & amino-acid sequence utilities
  • sequtil

Help or Get Help

Found a bug? Got feedback? Questions? Feel free to open an issue and let me know!