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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts imagej-scripts Public

    Python 1

Repositories

Showing 10 of 57 repositories
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    fmi-faim/faim-ipa’s past year of commit activity
    Python 11 BSD-3-Clause 6 16 1 Updated Feb 20, 2025
  • pixi-fiji Public

    Small demo project for starting a reproducible Fiji instance using pixi (via pyimagej or jgo)

    fmi-faim/pixi-fiji’s past year of commit activity
    Python 0 0 0 0 Updated Feb 19, 2025
  • napari-save-transformed Public

    Save image layers with their transformation applied

    fmi-faim/napari-save-transformed’s past year of commit activity
    Python 2 BSD-3-Clause 0 2 1 Updated Feb 17, 2025
  • cellvoyager-types Public

    Pydantic models for CellVoyager CV7000/CV8000 metadata

    fmi-faim/cellvoyager-types’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 17, 2025
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    fmi-faim/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,156 0 0 Updated Feb 4, 2025
  • example-project Public
    fmi-faim/example-project’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Feb 3, 2025
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    fmi-faim/ipa-project-template’s past year of commit activity
    Jinja 5 MIT 3 5 (1 issue needs help) 1 Updated Feb 3, 2025
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    fmi-faim/faim-wako-searchfirst’s past year of commit activity
    Python 1 MIT 1 8 4 Updated Feb 3, 2025
  • metamorph-mda-parser Public

    Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

    fmi-faim/metamorph-mda-parser’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 0 Updated Feb 3, 2025
  • pytorch-rdc-net Public
    fmi-faim/pytorch-rdc-net’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 31, 2025
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