This repository has been archived by the owner on Jan 10, 2019. It is now read-only.
- Garnet integration test case using FOXA1 ChIP-seq
- Correct formatting problems in example data wgEncodeRegDnaseClusteredV2.fasta.gz
- Fix bug when reading Garnet results in Forest
- Use relative paths for motif gifs in Garnet HTML output file
- Update sort order in Garnet output table
- Garnet uses balanced binary search tree to speed up the search for genes within peaks
- Change default values of arguments in Garnet's map_peaks_to_known_genes.py