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Issues list

snaf.initialize error issue
#59 opened Feb 21, 2025 by BijalThakkar
6
Installation question
#56 opened Feb 3, 2025 by swbujnowski
1
cannot run the test sample (OSError: [Errno 12] Cannot allocate memory; multiprocessing)
#55 opened Jan 28, 2025 by cjhong
2
Program freezes when processing large input files
#54 opened Nov 26, 2024 by LIH-WHU
1
Error when setting trypsin as enzyme for maxquant announcement bug Something isn't working
#53 opened Nov 18, 2024 by frankligy
Issue with Algorithm Progress Bar Stuck at jcmq.run - Assistance Requested
#52 opened Nov 11, 2024 by dnc-github
5
network issue for jcmq.run
#49 opened Sep 25, 2024 by shengxindaniu
8
Should the sequencing depth of different datasets and batch effect issues be considered when merging RNA-seq data from different cohorts for input?
#48 opened Sep 23, 2024 by jsrgwqx
1
How to run netMHCpan for millions of pHLA? announcement
#46 opened Jul 31, 2024 by frankligy
Retreiving nucleotide coding sequence and genomic origin for peptides
#45 opened Jun 13, 2024 by spvensko
1
No neoantigens table in #Interactive Neoantigen Viewer# (TypeError: 'NoneType' object is not subscriptable)
#44 opened Jun 13, 2024 by hywyh2018
4
Creating meta file within SPRINT pipeline
#43 opened Jun 12, 2024 by UCSFJL
5
How to generate the gtex_ctrl_db and tcga_matched_control_junction_count.h5ad, it is a good control.
#41 opened May 10, 2024 by renyuan001
5
how to subset a normal control from gtex or tcga?
#40 opened Apr 21, 2024 by renyuan001
3
rm: cannot remove './TMHMM_*': No such file or directory
#38 opened Apr 2, 2024 by frankligy
How to turn off GTEx control and use my own custom control samples? announcement
#37 opened Mar 27, 2024 by frankligy
Sorting combined GFF
#36 opened Mar 21, 2024 by nsalomonis
How to construct custom GTF/GFF for SNAF-B? announcement
#35 opened Mar 20, 2024 by frankligy
Making customized control
#34 opened Mar 20, 2024 by thestarocean
2
When jcmq.run, error in subexon_tran
#33 opened Mar 6, 2024 by LIH-WHU
8
Longer epitope sequences
#31 opened Feb 12, 2024 by p-levy
6
No such file or directory "assets"
#30 opened Feb 8, 2024 by LucaMannino
3
slight discrepancies of junction frequency between freq0 file and B antigen result help wanted Extra attention is needed
#28 opened Feb 5, 2024 by frankligy
Understanding output columns
#26 opened Jan 30, 2024 by spvensko
3
snaf.JunctionCountMatrixQuery.generate_results: KeyError: "None of ['query'] are in the columns"
#25 opened Jan 29, 2024 by infWang
4
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