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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 81 56

  2. lsd lsd Public

    🌈

    Python 52 30

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 28 17

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 27 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 21 2

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 71 repositories
  • motile_tracker Public

    A napari plugin for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 5 BSD-3-Clause 3 29 3 Updated Dec 20, 2024
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence’s past year of commit activity
    Python 3 MIT 10 7 4 Updated Dec 13, 2024
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder’s past year of commit activity
    Python 81 MIT 56 9 1 Updated Dec 10, 2024
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 0 MIT 0 6 0 Updated Dec 9, 2024
  • ilpy Public

    Unified python wrappers for popular ILP solvers

    funkelab/ilpy’s past year of commit activity
    C++ 3 MIT 2 4 4 Updated Dec 8, 2024
  • motile Public

    Multi-Object Tracker using Integer Linear Equations

    funkelab/motile’s past year of commit activity
    Python 27 MIT 5 18 3 Updated Dec 8, 2024
  • blinx_paper Public

    blinx paper

    funkelab/blinx_paper’s past year of commit activity
    TeX 0 1 0 0 Updated Dec 6, 2024
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    funkelab/witty’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Dec 2, 2024
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox’s past year of commit activity
    Python 4 1 2 2 Updated Nov 27, 2024
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    C++ 3 MIT 1 3 0 Updated Nov 20, 2024
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