Added few new functionalities to DIAMOND tool #5864
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bgruening
reviewed
Mar 14, 2024
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Can you also please take those changes over into this PR? https://github.com/galaxyproject/tools-iuc/pull/6262/files |
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🎉 yay! The latest version indeed fixes all the bugs. I will now focus on checking and adding new parameters to the tool (if any) |
bgruening
reviewed
Jan 29, 2025
bgruening
approved these changes
Jan 29, 2025
|
Yes, my next task would be estimation of memory requirements for TPV based on sequence lengths. |
bgruening
reviewed
Jan 31, 2025
RZ9082
reviewed
Feb 3, 2025
bgruening
approved these changes
Feb 3, 2025
|
Merci! |
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Following functionalities are added to this PR
--swipePerforms exhaustive alignment against all database sequences--soft-maskingPerforms soft-masking using softmasking either of method (none=default, seg, tantan)--index-chunksMemory utilization functionality for number of chunks for index processing--file-buffer-sizeMemory utilization functionality for file buffer size in bytesAdded
--fastersensitivity modeUpdated and added additional query gencode options
Added few more tests for above added functionalities