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adding easyconfigs: kilosort-4.0.13-foss-2022a.eb
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alberta committed Jul 18, 2024
1 parent dbdaacc commit 1599db9
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40 changes: 40 additions & 0 deletions easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
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easyblock = 'PythonBundle'

name = 'kilosort'
version = '4.0.13'
homepage = 'https://github.com/MouseLand/Kilosort'
description = """
Kilosort4 is a Python package for spike sorting on GPUs with template matching.
The software uses new graph-based approaches to clustering that improve performance
compared to previous versions
"""
toolchain = {'name': 'foss', 'version': '2022a'}


dependencies = [
('Python', '3.10.4'),
('PyTorch', '1.12.1', '-CUDA-11.7.0'),
('SciPy-bundle', '2022.05'),
('matplotlib', '3.5.2'),
('h5py', '3.7.0'),
('scikit-learn', '1.2.2'),
('tqdm', '4.64.0'),
('numba', '0.56.4', '-CUDA-11.7.0'),
]

use_pip = True
exts_list = [
('faiss-cpu', '1.8.0', {
'modulename': 'faiss',
'source_urls': ['https://files.pythonhosted.org/packages/06/f0/47615aeed86433e6ed84ea1c5e6fc650723fead0d7c30d56c78689bdb0b6/'],
'sources': ['faiss_cpu-1.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl'],
'checksums': ['51aaef5a1255d0ea88ea7e52a2415f98c5dd2dd9cec10348d55136541eeec99f'],
}),
(name, version, {
'checksums': ['6b3c24290a21f310a70f1ec4454d41c8a111babda145ccf1ec3f12046a48b5f8'],
}),
]

sanity_pip_check = True

moduleclass = 'tools'

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