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adding easyconfigs: kilosort-4.0.13-foss-2022a.eb
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alberta
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Jul 18, 2024
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easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
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easyblock = 'PythonBundle' | ||
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name = 'kilosort' | ||
version = '4.0.13' | ||
homepage = 'https://github.com/MouseLand/Kilosort' | ||
description = """ | ||
Kilosort4 is a Python package for spike sorting on GPUs with template matching. | ||
The software uses new graph-based approaches to clustering that improve performance | ||
compared to previous versions | ||
""" | ||
toolchain = {'name': 'foss', 'version': '2022a'} | ||
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dependencies = [ | ||
('Python', '3.10.4'), | ||
('PyTorch', '1.12.1', '-CUDA-11.7.0'), | ||
('SciPy-bundle', '2022.05'), | ||
('matplotlib', '3.5.2'), | ||
('h5py', '3.7.0'), | ||
('scikit-learn', '1.2.2'), | ||
('tqdm', '4.64.0'), | ||
('numba', '0.56.4', '-CUDA-11.7.0'), | ||
] | ||
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use_pip = True | ||
exts_list = [ | ||
('faiss-cpu', '1.8.0', { | ||
'modulename': 'faiss', | ||
'source_urls': ['https://files.pythonhosted.org/packages/06/f0/47615aeed86433e6ed84ea1c5e6fc650723fead0d7c30d56c78689bdb0b6/'], | ||
'sources': ['faiss_cpu-1.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl'], | ||
'checksums': ['51aaef5a1255d0ea88ea7e52a2415f98c5dd2dd9cec10348d55136541eeec99f'], | ||
}), | ||
(name, version, { | ||
'checksums': ['6b3c24290a21f310a70f1ec4454d41c8a111babda145ccf1ec3f12046a48b5f8'], | ||
}), | ||
] | ||
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sanity_pip_check = True | ||
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moduleclass = 'tools' |