added dockstore yml, changed tab to spaces in gtgtfToCallingIntervals…

… task (#9)
gatk-workflows · May 10, 2021 · c5fc93e · c5fc93e
1 parent 4657407
commit c5fc93e
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/.dockstore.yml b/.dockstore.yml
@@ -0,0 +1,7 @@
+version: 1.2
+workflows:
+   - name: gatk4-rnaseq-germline-snps-indels
+     subclass: WDL
+     primaryDescriptorPath: /gatk4-rna-best-practices.wdl
+     testParameterFiles:
+     -  /gatk4-rna-germline-variant-calling.inputs.json
diff --git a/gatk4-rna-best-practices.wdl b/gatk4-rna-best-practices.wdl
@@ -256,7 +256,7 @@ task gtfToCallingIntervals {
 
     command <<<
 
-	set -e
+        set -e
 
         Rscript --no-save -<<'RCODE'
             gtf = read.table("${gtf}", sep="\t")
-Original file line number
+Diff line change
@@ Expand Up / @@ -256,7 +256,7 @@ task gtfToCallingIntervals { @@
         command <<<
-    	set -e
+            set -e
             Rscript --no-save -<<'RCODE'
                 gtf = read.table("${gtf}", sep="\t")
@@ Expand Down @@