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Filtrations For GNNs

A Project for UC Davis Stats 221

To install, run the following commands on your conda prompt:

  1. Install Anaconda: https://www.anaconda.com/download
  2. Open Conda Prompt on Windows (or Terminal for Mac / Linux)
  3. Type in the command: git clone https://github.com/gdepaul/FiltrationsForGNNs
  4. Type in the command: cd FiltrationsForGNNs
  5. Type in the command: conda env create -f GNNsAndTDA.yml -n FiltrationsForGNNs
  6. Type in the command: conda activate FiltrationsForGNNs
  7. Type in the command: jupyter notebook
  8. Open in the pop up browser window: example_network.ipynb
  9. Click Kernel > Restart & Run All
  10. Check if all the cells with numbers run. If they do, you're all ready!

Note: Need to have git access on your laptop before doing step 1:

  • Mac: sudo port install gh
  • Windows: sudo apt install gh

Then you should be able to run all of the downloaded examples.