Filtrations For GNNs

A Project for UC Davis Stats 221

To install, run the following commands on your conda prompt:

1. Install Anaconda: https://www.anaconda.com/download
2. Open Conda Prompt on Windows (or Terminal for Mac / Linux)
3. Type in the command: git clone https://github.com/gdepaul/FiltrationsForGNNs
4. Type in the command: cd FiltrationsForGNNs
5. Type in the command: conda env create -f GNNsAndTDA.yml -n FiltrationsForGNNs
6. Type in the command: conda activate FiltrationsForGNNs
7. Type in the command: jupyter notebook
8. Open in the pop up browser window: example_network.ipynb
9. Click Kernel > Restart & Run All
10. Check if all the cells with numbers run. If they do, you're all ready!

Note: Need to have git access on your laptop before doing step 1:

• Mac: sudo port install gh
• Windows: sudo apt install gh

Then you should be able to run all of the downloaded examples.