Update cloudgene.yaml file for pgs

genepi · Dec 10, 2023 · bff1edf · bff1edf
1 parent d7b7c31
commit bff1edf
Showing 1 changed file with 8 additions and 4 deletions.
diff --git a/files/imputationserver-pgs.yaml b/files/imputationserver-pgs.yaml
@@ -1,8 +1,8 @@
 id: imputationserver-pgs
 name: Polygenic Score Calculation
-description: This extension enables to calculate Polygenic Risk Scores.
+description: You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.
 version: 1.8.0
-website: https://imputationserver.readthedocs.io
+website: https://imputationserver.readthedocs.io/en/latest/pgs/
 category:
 
 installation:
@@ -95,6 +95,7 @@ workflow:
          0.1: 0.1
          0.2: 0.2
          0.3: 0.3
+       visible: false
 
      - id: phasing
        description: Phasing
@@ -103,6 +104,7 @@ workflow:
        values:
          eagle: Eagle v2.4 (phased output)
          no_phasing: No phasing
+       visible: false
 
      - id: population
        description: Population
@@ -120,6 +122,7 @@ workflow:
           qconly: Quality Control Only
           imputation: Quality Control & Imputation
           phasing: Quality Control & Phasing Only
+       visible: false
 
      - id: aesEncryption
        description: AES 256 encryption
@@ -129,7 +132,7 @@ workflow:
        values:
          true: yes
          false: no
-       visible: true
+       visible: false
 
      - id: meta
        description: Generate Meta-imputation file
@@ -138,7 +141,7 @@ workflow:
        values:
          true: yes
          false: no
-       visible: true
+       visible: false
 
      - id: myseparator0
        type: separator
@@ -170,6 +173,7 @@ workflow:
        values:
          HGDP_938_genotyped: Worldwide (HGDP)
          HGDP_938_imputed: Worldwide (imputed HGDP)
+       visible: false
 
      - id: dim
        description: Number of principal components to compute