Update pgsCategory filter

genepi · Dec 11, 2023 · c73a0c3 · c73a0c3
1 parent 7aecb01
commit c73a0c3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/java/genepi/imputationserver/steps/Imputation.java b/src/main/java/genepi/imputationserver/steps/Imputation.java
@@ -130,7 +130,7 @@ public boolean run(WorkflowContext context) {
 		if (pgsPanel != null) {
 			context.println("  PGS: " + FileUtil.getFilename(pgsPanel.getScores()));
 
-			if (pgsCategory != null) {
+			if (pgsCategory != null && !pgsCategory.isEmpty() && !pgsCategory.equals("all")) {
 				String includeScoreFilename = FileUtil.path(context.getLocalTemp(), "include-scores.txt");
 				FilterMetaCommand filter = new FilterMetaCommand();
 				filter.setCategory(pgsCategory);