Migrate Jenkins workflow to Github Actions #487
Workflow file for this run
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| name: ReSDK CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - "[0-9]+.[0-9]+.[0-9]+*" | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| unittest: | |
| runs-on: arc-runner | |
| env: | |
| TOX_COMMAND: "tox --skip-missing-interpreters false" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| toxenv: [py38, py39, py310, py311, py312, docs, linters, package] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Assert PR is up-to-date | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| git fetch origin ${{ github.base_ref }} | |
| git_change_target_merge_base=$(git merge-base HEAD origin/${{ github.base_ref }}) | |
| git_change_target_sha=$(git rev-parse origin/${{ github.base_ref }}) | |
| if [[ "${git_change_target_merge_base}" != "${git_change_target_sha}" ]]; then | |
| echo 'Pull request is not up-to-date!' | |
| echo "Please, rebase your pull request on top of '${{ github.base_ref }}' (commit: ${git_change_target_sha})." | |
| exit 1 | |
| fi | |
| - name: Run Tests | |
| run: > | |
| ${{ env.TOX_COMMAND }} -e ${{ matrix.toxenv }} | |
| e2e: | |
| runs-on: arc-runner | |
| needs: unittest | |
| env: | |
| GENESIS_POSTGRESQL_NAME: resolwe-genialis | |
| GENESIS_POSTGRESQL_USER: genialis-base | |
| GENESIS_POSTGRESQL_PORT: 55434 | |
| GENESIS_REDIS_PORT: 56381 | |
| GENESIS_RESDK_PATH: ".." | |
| GENESIS_REST_THROTTLING: '{"login": "100000/hour", "credentials": "100000/hour", "email": "100000/hour"}' | |
| services: | |
| postgres: | |
| image: public.ecr.aws/docker/library/postgres:14 | |
| env: | |
| POSTGRES_USER: genialis-base | |
| POSTGRES_HOST_AUTH_METHOD: trust | |
| ports: | |
| - 55434:5432 | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| redis: | |
| image: public.ecr.aws/docker/library/redis:7-alpine | |
| ports: | |
| - 56381:6379 | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Checkout resolwe-bio-py | |
| uses: actions/checkout@v4 | |
| - name: Checkout genialis-base | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: genialis/genialis-base | |
| path: genialis-base | |
| ssh-key: ${{ secrets.GHA_SSH_PRIVATE_KEY_GENIALIS_DEPLOY }} | |
| - name: Run tests | |
| run: | | |
| cd genialis-base | |
| # Prepare frontend configuration | |
| mkdir -p frontend/genjs/schema | |
| echo '{}' > frontend/genjs/schema/configuration.json | |
| # Make sure `python` refers to the tox environment's Python | |
| export PATH=`pwd`/.tox/py310-e2e-resdk/bin:$PATH | |
| tox --skip-missing-interpreters false -e py310-e2e-resdk | |
| build: | |
| runs-on: arc-runner | |
| needs: [unittest, e2e] | |
| if: startsWith(github.ref, 'refs/tags') | |
| env: | |
| PYTHON: "python3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install build | |
| run: ${{ env.PYTHON }} -m pip install --user build | |
| - name: Build a binary wheel and a source tarball | |
| run: ${{ env.PYTHON }} -m build --sdist --wheel --outdir dist/ . | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: .coverage | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1.8 | |
| with: | |
| password: ${{ secrets.pypi_password }} |