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Replace int64 with nullable Int64 in RNATables #353

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merged 1 commit into from
Apr 16, 2024

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AnzeLovse
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Calling RNATables.qc would fail with Cannot convert non-finite values (NA or inf) to integer: Error while type casting for column 'star_assigned_reads' in cases where MultiQC data is not available for a subset of samples.

All other integer columns use Int64 dtype which supports missing values (https://pandas.pydata.org/docs/user_guide/integer_na.html).

@AnzeLovse
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@JureZmrzlikar would you please review this.

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LGTM, thanks for fixing this!

@AnzeLovse AnzeLovse force-pushed the fix/rnatables-ints branch from e139f90 to 6398e17 Compare April 11, 2024 11:17
@JureZmrzlikar JureZmrzlikar merged commit 6398e17 into genialis:master Apr 16, 2024
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2 participants