faster writing

genomewalker · Nov 18, 2024 · ed6230e · ed6230e
1 parent f189476
commit ed6230e
Show file tree

Hide file tree

Showing 2 changed files with 337 additions and 296 deletions.
diff --git a/bam_filter/reassign.py b/bam_filter/reassign.py
@@ -27,6 +27,7 @@
 import shutil
 import uuid
 import psutil
+from memory_profiler import profile
 
 log = logging.getLogger("my_logger")
 
@@ -477,6 +478,7 @@ def normalize_scores(scores):
     return probabilities
 
 
+@profile
 def get_bam_data(
     parms,
     ref_lengths=None,