Update nextflow.ngp.config

genomic-medicine-sweden · Jan 29, 2025 · 3992f16 · 3992f16
1 parent e30c954
commit 3992f16
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/configs/nextflow.ngp.config b/configs/nextflow.ngp.config
@@ -266,7 +266,7 @@ process {
 		memory = '32.GB'
 		time=2.h
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/medaka", mode: 'copy', overwrite: true ]
-		ext.args = "--threads 40 -m r941_min_sup_g507"
+		ext.args = "-t 40 -m r941_min_sup_g507"
 	}
 	withName: mlst {
 		container = "${params.containerDir}/mlst.sif"