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Update to v0.9.0 #342

Merged

ryanjameskennedy merged 1 commit into master from v0.9.0

Aug 29, 2024

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ryanjameskennedy commented Aug 29, 2024

Description

Summary of the changes made:

Added long-read test data (S. aureus)
Added samplelist_nanopore.csv for running long-read test data
Added location of documentation to README
Added cdmDir to config
Added process for adding IGV annotation tracks with PRP.
Updated how mycobacterium_tuberculosis workflow adds IGV annotation tracks.
Fixed --qc argument filepath to be full filepath to output
Fixed tbprofiler url in container Makefile
Fixed TB installation steps in main Makefile
Updated TbProfiler to version 6.3
Updated PRP to version 0.10.0
Removed delly annotation
Updated vcf args in prp module

Primary function of PR

Major functionality improvement / New type of analysis

Testing

Tested on ecoli, saureus and tb samples

ryanjameskennedy requested a review from a team as a code owner

August 29, 2024 11:25


          Update to v0.9.0

b655634

ryanjameskennedy force-pushed the v0.9.0 branch from 11df547 to b655634 Compare

August 29, 2024 11:28

mhkc approved these changes

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mhkc left a comment

Looks good

ryanjameskennedy merged commit dc29d0e into master

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