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dev-python/snakemake: version bump 8.16.0 #1280

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dev-python/snakemake: version bump 8.16.0 #1280

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6c212bc
dev-python/snakemake-interface-executor-plugins: version bump 9.2.0
mschubert Jul 8, 2024
1bcff60
dev-python/snakemake-interface-storage-plugins: version bump 3.2.3
mschubert Jul 8, 2024
e525250
dev-python/snakemake: version bump 8.16.0
mschubert Jul 8, 2024
310e816
dev-python/datrie: fix gcc14 compile
mschubert Jul 11, 2024
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4 changes: 3 additions & 1 deletion dev-python/datrie/datrie-0.8.2-r1.ebuild
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@@ -1,4 +1,4 @@
# Copyright 1999-2021 Gentoo Authors
# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=8
Expand Down Expand Up @@ -28,5 +28,7 @@ distutils_enable_tests pytest
python_prepare_all() {
# do not depend on pytest-runner
sed -i "/pytest-runner/d" setup.py || die
# https://github.com/pytries/datrie/pull/99
sed -i "12s/struct AlphaMap:/ctypedef struct AlphaMap:/" src/cdatrie.pxd || die
distutils-r1_python_prepare_all
}
2 changes: 1 addition & 1 deletion dev-python/snakemake-interface-executor-plugins/Manifest
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DIST snakemake_interface_executor_plugins-9.1.1.tar.gz 16342 BLAKE2B d478afe4fdbb91c0e7a1447de002b93a5583089b9ed2164c9086f536d7b8b6c9f3e52687fc0b299830a86639c1dca0e682f01b17349a58deac5efa884ddc381a SHA512 bcb589ab251fbab69cdddb5eb23257b18164c42c7b3e5014e43aeec278c5453d9713e7c1791ecb15899a8593a5cb302cfc56b8e35539a6474ad1c6d79d892592
DIST snakemake_interface_executor_plugins-9.2.0.tar.gz 16490 BLAKE2B e239c68edbb14c89322a2bd91bb60beb73a939e523e01bec882ee6762412478bc28d856182cf82d62a7879b65797b299cce34aa69cea6d216b6e3bfb3aa59bca SHA512 d6f6ec6cba2649b801bf2352ac60a66bfdc419e53987c77ce64aa37ed08aebec54d07d0e99b1ef212f122b87b40e7f0cb0a0713a2b756e28228dbb9b27b27fce
0 ...e-interface-executor-plugins-9.1.1.ebuild → ...e-interface-executor-plugins-9.2.0.ebuild
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2 changes: 1 addition & 1 deletion dev-python/snakemake-interface-storage-plugins/Manifest
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@@ -1 +1 @@
DIST snakemake_interface_storage_plugins-3.2.2.tar.gz 11949 BLAKE2B 56e33546c1a9a0eeb92560ff2eb3950b2b91edaa5c527b4b504082bd2ed3f0fbd1b8e8cd24d1391375e99c2b2041aa47a30ac62dd009ec1188cffee65fa606cb SHA512 0151f297ae5f597016e02937021af2583982d5df0cb0c353274618799f68a4a99a30a19f631f1a8c4dabf74833f39c47a4405f7c0e9be8b3397ae350ae23e62d
DIST snakemake_interface_storage_plugins-3.2.3.tar.gz 11930 BLAKE2B 5f46a52d46c11a2feb9840e5a3eb67374ad4a148ff2366953be0285877d1a33c344fcf9930a8145fccd1987995ddaf177997e393a9f21bbd316102d620b4bc9d SHA512 7692c9cacc5ece8e76dab67be3a8ed1a32930b27ce7edaa3998b23305723e7e01b3c04954b61585d876b5410caf3036efd0cb9569e159abcc5a95d9ab2446494
0 ...ke-interface-storage-plugins-3.2.2.ebuild → ...ke-interface-storage-plugins-3.2.3.ebuild
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2 changes: 1 addition & 1 deletion dev-python/snakemake/Manifest
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@@ -1,2 +1,2 @@
DIST snakemake-7.32.4.gh.tar.gz 8885863 BLAKE2B 6bb7ff4722dd06f0edf5e8079b42f5e54d6f55f41e2987b7dae7f9b75df0d4d836138e28340e5977107a5cc0b5afe793b0d7897c501246cc1b4340eb4eca2f17 SHA512 34fef61528b18facab798652c88ed5c698ef02161e023255fdd024b7c7781c4e582cdb04b2740fdff9b6f3600acaec719742984acee57920bb48ef3b5af99d9a
DIST snakemake-8.14.0.gh.tar.gz 8662241 BLAKE2B fc36722b00cb3da11e836d5c521fe6600d176fd6fc3bd8a39336bc6a3d34bfcb689727d9990351cde247e377dca1131bda5dd84852a32ddb91fed44aa62c020e SHA512 68a0aabeed435e032d01f4d38d37c4b37ed7f624bf3768a1654daccdbf95ceb06646d7302ca04ea4f20695ec9706e015d146794aa000ec108d18d6ad09f3671b
DIST snakemake-8.16.0.gh.tar.gz 8665306 BLAKE2B 76d3455ce9a7ccc749adb5a729ab954d7a3fd97dc2432c3a0e9aba1ace1cb08e377244a2a2527c676b9709f9bb8b5af29948c0385657755bbbc8449b136fc26d SHA512 29b6ba6da5dbbd347dee45114b949c976973555c9234f8a150dcd83e4af1638c1773590320bc44284cf20ea445efb377dcf9199921ed2b4d62bad3a60a41af3c
26 changes: 13 additions & 13 deletions dev-python/snakemake/snakemake-8.14.0.ebuild → dev-python/snakemake/snakemake-8.16.0.ebuild
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Expand Up @@ -35,33 +35,33 @@ RDEPEND="
dev-python/appdirs[${PYTHON_USEDEP}]
dev-python/immutables[${PYTHON_USEDEP}]
dev-python/ConfigArgParse[${PYTHON_USEDEP}]
dev-python/connection_pool[${PYTHON_USEDEP}]
>=dev-python/connection_pool-0.0.3[${PYTHON_USEDEP}]
dev-python/datrie[${PYTHON_USEDEP}]
dev-python/docutils[${PYTHON_USEDEP}]
dev-python/GitPython[${PYTHON_USEDEP}]
dev-python/humanfriendly[${PYTHON_USEDEP}]
dev-python/jinja[${PYTHON_USEDEP}]
>=dev-python/jinja-3.0[${PYTHON_USEDEP}]
dev-python/jsonschema[${PYTHON_USEDEP}]
dev-python/nbformat[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
dev-python/psutil[${PYTHON_USEDEP}]
dev-python/pyyaml[${PYTHON_USEDEP}]
dev-python/requests[${PYTHON_USEDEP}]
>=dev-python/requests-2.8.1[${PYTHON_USEDEP}]
dev-python/reretry[${PYTHON_USEDEP}]
dev-python/smart-open[${PYTHON_USEDEP}]
dev-python/snakemake-interface-executor-plugins[${PYTHON_USEDEP}]
dev-python/snakemake-interface-common[${PYTHON_USEDEP}]
dev-python/snakemake-interface-storage-plugins[${PYTHON_USEDEP}]
dev-python/snakemake-interface-report-plugins[${PYTHON_USEDEP}]
>=dev-python/smart-open-4.0[${PYTHON_USEDEP}]
>=dev-python/snakemake-interface-common-1.17.0[${PYTHON_USEDEP}]
>=dev-python/snakemake-interface-executor-plugins-9.2.0[${PYTHON_USEDEP}]
>=dev-python/snakemake-interface-storage-plugins-3.2.3[${PYTHON_USEDEP}]
>=dev-python/snakemake-interface-report-plugins-1.0.0[${PYTHON_USEDEP}]
dev-python/stopit[${PYTHON_USEDEP}]
dev-python/tabulate[${PYTHON_USEDEP}]
dev-python/throttler[${PYTHON_USEDEP}]
dev-python/toposort[${PYTHON_USEDEP}]
>=dev-python/toposort-1.10[${PYTHON_USEDEP}]
dev-python/wrapt[${PYTHON_USEDEP}]
dev-python/yte[${PYTHON_USEDEP}]
dev-python/dpath[${PYTHON_USEDEP}]
dev-python/conda-inject[${PYTHON_USEDEP}]
sci-mathematics/pulp[${PYTHON_USEDEP}]
>=dev-python/yte-1.5.1[${PYTHON_USEDEP}]
>=dev-python/dpath-2.1.6[${PYTHON_USEDEP}]
>=dev-python/conda-inject-1.3.1[${PYTHON_USEDEP}]
>=sci-mathematics/pulp-2.3.1[${PYTHON_USEDEP}]
"

# distutils_enable_sphinx docs \
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