dev-python/snakemake and deps: version bumps #1296
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Signed-off-by: Michael Schubert <[email protected]>
Signed-off-by: Michael Schubert <[email protected]>
Signed-off-by: Michael Schubert <[email protected]>
Signed-off-by: Michael Schubert <[email protected]>
Signed-off-by: Michael Schubert <[email protected]>
| # ImportError: cannot import name 'snakemake' from 'snakemake.script' | ||
| tests/test_script_py/scripts/test_explicit_import.py |
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Does setting PYTHONPATH (or similar) help for this one?
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If I understand this comment correctly, it is not a matter of simply adding to PYTHONPATH:
running
from snakemake.script import snakemakeoutside of a Snakemake "context", sincesnakemake.script.snakemake(lower case) is simply a type hint that can be used by editor. At execution time, thesnakemakeobject needs to be created by snakemake, which is done by the boilerplate/preamble
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That comment seems to suggest that passing some path to epytest would resolve the problem, have you tried this?
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The import works neither in ${BUILD_DIR}/build/lib nor ${BUILD_DIR}/install/${EPREFIX}/<python-site-dir>, nor with these added to $PYTHONPATH in the original directory.
Given that this PR is already an improvement over restricting all tests, I'd suggest to accept excluding this test until I can dig more into it.
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Thanks 👍 |
Removal of
BDEPENDSinsnakemake-8.25.3.ebuildis tested and those deps are not requiredIgnored/deselected tests have been reported upstream: snakemake/snakemake#2961 or are missing additional plugin ebuilds