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Fix double underscores and typos #8553

Fix double underscores and typos

Fix double underscores and typos #8553

Workflow file for this run

name: linux
on:
push:
branches:
- 'main'
- 'aspect-*'
pull_request:
concurrency:
group: ${{ github.actor }}-${{ github.ref }}
cancel-in-progress: true
env:
OMPI_MCA_btl_base_warn_component_unused: 0
OMPI_MCA_mpi_yield_when_idle: 1
OMPI_MCA_rmaps_base_oversubscribe: 1
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
jobs:
linux-nounity:
#linux build with unity/precompiled headers disabled
name: no-unity-build
runs-on: [ubuntu-20.04]
steps:
- uses: actions/checkout@v4
- name: setup
run: |
sudo apt-get update
sudo apt-get install -y software-properties-common
sudo add-apt-repository ppa:ginggs/deal.ii-9.5.1-backports
sudo apt-get update
sudo apt-get install -yq --no-install-recommends libdeal.ii-dev
- name: compile
run: |
mkdir build-no-unity
cd build-no-unity
cmake -D CMAKE_BUILD_TYPE=Debug -D ASPECT_PRECOMPILE_HEADERS=OFF -D ASPECT_UNITY_BUILD=OFF -D CMAKE_CXX_FLAGS='-Werror' -D ASPECT_ADDITIONAL_CXX_FLAGS='-Wdeprecated-declarations' ..
make -j 4
./aspect --test
linux:
#linux build including indent, examples and documentation
name: indent+documentation
runs-on: [ubuntu-20.04]
steps:
- uses: actions/checkout@v4
- name: setup
run: |
sudo apt-get update
sudo apt-get install -y software-properties-common
sudo add-apt-repository ppa:ginggs/deal.ii-9.5.1-backports
sudo apt-get update
sudo apt-get install -yq --no-install-recommends texlive-plain-generic texlive-base texlive-latex-recommended texlive-latex-base texlive-fonts-recommended texlive-bibtex-extra lmodern texlive-latex-extra texlive-science graphviz python3-pip python-setuptools libdeal.ii-dev doxygen latexmk biber inkscape
doxygen --version
wget https://github.com/tjhei/astyle/releases/download/v2.04/astyle_2.04_linux.tar.gz
tar xf astyle_2.04_linux.tar.gz
cd astyle/build/gcc && make
sudo USER=root make install
cd
rm -rf astyle*
astyle --version
- name: make indent
run: |
./contrib/utilities/indent
git diff > changes-astyle.diff
- name: archive indent results
uses: actions/upload-artifact@v4
with:
name: changes-astyle.diff
path: changes-astyle.diff
- name: check indentation
run: |
git diff --exit-code
- name: citation list
run: |
cd doc
latexmk -pdf -f citations-list.tex
grep WARN citations-list.blg && echo "warnings found!" && exit 1
echo "OK"
- name: compile
run: |
mkdir build
cd build
/usr/bin/cmake -D CMAKE_BUILD_TYPE=Debug -D ASPECT_PRECOMPILE_HEADERS=ON -D ASPECT_UNITY_BUILD=ON \
-D CMAKE_CXX_FLAGS='-Werror' -D ASPECT_INSTALL_EXAMPLES=ON ..
make -j 4
./aspect --test
- name: doc
run: |
cd doc
export OMPI_MCA_btl="self,vader"
./update_parameters.sh $GITHUB_WORKSPACE/build/aspect
tests:
#linux build including tests
name: tests
runs-on: [ubuntu-latest]
strategy:
fail-fast: false
matrix:
include:
- image: "geodynamics/aspect-tester:focal-dealii-9.5-v3"
run-tests: "ON"
compare-tests: "ON"
result-file: "changes-test-results-9.5.diff"
container-options: '--name container'
- image: "geodynamics/aspect-tester:focal-dealii-master"
run-tests: "ON"
compare-tests: "OFF"
result-file: "changes-test-results-master.diff"
container-options: '--user 0 --name container'
container:
image: ${{ matrix.image }}
options: ${{ matrix.container-options }}
steps:
- uses: actions/checkout@v4
- name: compile
run: |
mkdir build
cd build
cmake \
-D CMAKE_BUILD_TYPE=Debug \
-G 'Ninja' \
-D CMAKE_CXX_FLAGS='-Werror' \
-D ASPECT_ADDITIONAL_CXX_FLAGS='-O3 -Wdeprecated-declarations' \
-D ASPECT_TEST_GENERATOR='Ninja' \
-D ASPECT_PRECOMPILE_HEADERS=ON \
-D ASPECT_UNITY_BUILD=ON \
-D ASPECT_RUN_ALL_TESTS='${{ matrix.run-tests }}' \
-D ASPECT_COMPARE_TEST_RESULTS='${{ matrix.compare-tests }}' \
-D CMAKE_UNITY_BUILD_BATCH_SIZE=8 \
..
ninja -j 4
./aspect --test
- name: prebuild tests
run: |
# prebuilding tests...
cd build/tests
ninja -k 0 tests || true
- name: report test results
continue-on-error: true
run: |
cd build
ctest \
--no-compress-output \
--test-action Test \
--output-on-failure || touch test_run_failed
- name: write test results
continue-on-error: true
run: |
cd build
# TODO: temporary fix for a git incompability.
# Can likely be removed when the tester image runs on Ubuntu 22.04
/usr/bin/git config --system --add safe.directory /__w/aspect/aspect
ninja generate_reference_output
git diff ../tests > ${{ matrix.result-file }}
- name: archive test results
uses: actions/upload-artifact@v4
with:
name: ${{ matrix.result-file }}
path: build/${{ matrix.result-file }}
- name: check test results
run: |
if [ -f build/test_run_failed ] || [ -s build/${{ matrix.result-file}} ]; then
exit 1
else
exit 0
fi