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Bug fix: ALK6 in HEMCO_Config.rc should be ALK7 #2462

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merged 1 commit into from
Sep 16, 2024

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msulprizio
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Name and Institution (Required)

Name: Melissa Sulprizio
Institution: Harvard

Describe the update

With the updated monoterpene/PN/AN chemistry and emissions added in 14.5.0-alpha.6 (updates on top of PR #2318), emissions for >=C6 alkanes from CEDS were added to HEMCO_Config.rc. These were incorrectly assigned to species ALK6 (not defined) when they should be assigned to ALK7.

Other fixes here include:

  • Update HEMCO_Diagn.rc (and HISTORY.rc for GCHP) to save out ALK7 emissions
  • Fix category for CEDS ship emissions of HCOOH and ALK7 in HEMCO_Config.rc (should be 10, not 1)
  • Make fullchem HEMCO_Diagn.rc for WRF consistent with GCClassic version

Please provide a clear and concise overview of the update.

Expected changes

This will increase ALK7 (a new species in 14.5.0) by including its emissions.

Related Github Issue

Closes #2459

With the updated monoterpene/PN/AN chemistry and emissions added in
14.5.0-alpha.6 (updates on top of PR #2318), emissions for >=C6 alkanes
from CEDS were added to HEMCO_Config.rc. These were incorrectly assigned
to species ALK6 (not defined) when they should be assigned to ALK7.

Other fixes here include:

- Update HEMCO_Diagn.rc (and HISTORY.rc for GCHP) to save out ALK7 emissions
- Fix category for CEDS ship emissions of HCOOH and ALK7 in HEMCO_Config.rc (should be 10, not 1)
- Make fullchem HEMCO_Diagn.rc for WRF consistent with GCClassic version

Closes #2459

Signed-off-by: Melissa Sulprizio <[email protected]>
@msulprizio msulprizio added the category: Bug Fix Fixes a previously-reported bug label Sep 13, 2024
@msulprizio msulprizio added this to the 14.5.0 milestone Sep 13, 2024
@msulprizio msulprizio requested a review from yantosca September 13, 2024 14:22
@msulprizio msulprizio self-assigned this Sep 13, 2024
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@yantosca yantosca left a comment

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Looks good to merge! Thanks @msulprizio. I'll start pulling this in and testing.

@yantosca
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Integration tests are running.

@yantosca
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==============================================================================
GEOS-Chem Classic: Execution Test Results

CodeDir   : 5e00d7e GEOS-Chem update: Merge PR #2457 (Update Is_Photolysis tags)
GEOS-Chem : 084a8cf8d Merge PR #2462 (Bug fix: ALK6 in HEMCO_Config.rc should be ALK7)
HEMCO     : c6a9d46 Merge PR #287 (Updated Y. Wang soil NOx scheme as an option)
Cloud-J   : 6bf4a36 Merge pull request #26 from geoschem/feature/define_max_rather_than_exact_num_jvalues
HETP      : 2a99b24 Merge pull request #2 from geoschem/bugfix/initialize_local_variables

Using 24 OpenMP threads
Number of execution tests: 30

Submitted as SLURM job: 46770790
==============================================================================

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%  All execution tests passed!  %%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@yantosca
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All GCHP integration tests also passed:

==============================================================================
GCHP: Execution Test Results

CodeDir       : 984823f GEOS-Chem update: Merge PR #2457 (Update Is_Photolysis tags)
MAPL          : 231d53c Merge pull request #36 from geoschem/feature/improve_hflux_regridding
GMAO_Shared   : 4ddb3ec Merge pull request #2 from geoschem/feature/mapl-upgrade
ESMA_cmake    : ad5deba Added ecbuild as a submodule of ESMA_cmake
gFTL-shared   : 4b82492 Merge branch 'upstream_v1.5.0' into feature/v1.5.0
FMS           : 259759d Merge pull request #3 from geoschem/feature/update_gmao_libs
FVdycoreCubed : af42462 Merge PR #8 (Add PLEadv diagnostic for offline advection in GCHP)
geos-chem     : 084a8cf8d Merge PR #2462 (Bug fix: ALK6 in HEMCO_Config.rc should be ALK7)
HEMCO         : c6a9d46 Merge PR #287 (Updated Y. Wang soil NOx scheme as an option)
yaFyaml       : 19afe50 Merge branch 'upstream_v1.0.4' into feature/v1.0.4
pFlogger      : 2c4b724 Merge branch 'upstream_v1.9.1' into feature/v1.9.1
Cloud-J       : 6bf4a36 Merge pull request #26 from geoschem/feature/define_max_rather_than_exact_num_jvalues
HETP          : 2a99b24 Merge pull request #2 from geoschem/bugfix/initialize_local_variables

Number of execution tests: 12

Submitted as SLURM job: 46770957
==============================================================================

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%  All execution tests passed!  %%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

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Inconsistency in species defined in GEOS-Chem and HEMCO config following pull request #2318
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