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Dev branch#31

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cchu70 merged 29 commits intomastergetzlab/AnnoMate:masterfrom dev_branchgetzlab/AnnoMate:dev_branchCopy head branch name to clipboardJun 20, 2024

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Commits

Commits on Jun 3, 2024

• debug tests

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• conda yaml file

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• update conda environment install

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• docker setup

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• add running in docker information

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• update documentation

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• Merge pull request #28 from getzlab/tests

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• redeploy docker and update documentation

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• mention colab notebook in readme

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• create a quick version of the intro notebook

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• setuptools version <60 for compatibility with python 3.12

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• downgrade setuptools first before installing numpy

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Commits on Jun 12, 2024

• Update README

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Commits on Jun 19, 2024

• Update setup.py with new cnv_suite version

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• Merge branch 'dev_branch' into README_reorganization

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• Merge pull request #30 from getzlab/README_reorganization

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• github action for pushing to ghcr

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• Update deploy_ghcr_docker.yml typo

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• Update deploy_ghcr_docker.yml lowercase name

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• update docker address and include prereqs and outcomes in tutorial notebooks

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Commits on Jun 20, 2024

• Update README.md fix typo

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• Merge branch 'master' into dev_branch

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• bump pypi version

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• Merge branch 'dev_branch' of github.com:getzlab/AnnoMate into dev_branch

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• update data_pkl_path to data_path

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• Update Dockerfile

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• Update README.md - Remove gif

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• Update Dockerfile add simulated data repo

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• Update README.md

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