Dev branch

.gitignore

@@ -113,6 +113,7 @@ venv*/
 ENV/
 env.bak/
 venv.bak/
+annoEnv/
 
 
 # Spyder project settings

README.md

@@ -28,13 +28,13 @@ This is _highly_ recommended to manage different dependencies required by differ
 
     `<your_env>` is the name of your environment (ie purity_review_env). Check the corresponding reviewer's `setup.py` file to get the proper python version for `py_version`. Reviewers have been tested on `3.8` and `3.9`.
 
-4. Activate your conda environment
+3. Activate your conda environment
    ```
    conda activate <your_env>
    ```
    **You'll want your environment activated when you install AnnoMate in any of the below mentioned ways** 
 
-5. Add conda environment to ipykernel<sup>2</sup>
+4. Add conda environment to ipykernel<sup>2</sup>
 
     When you open a jupyter notebook, you can change the environment the notebook cells are run in to `<your_env>`
 

setup.py

@@ -23,7 +23,8 @@
     package_dir={"": "."},
     packages=setuptools.find_packages(where=".", exclude=['zeption.examples', '']),
     python_requires=">=3.8", # last tested version: 3.9
-    install_requires = ['setuptools<60.0', # https://numpy.org/doc/stable/reference/distutils_status_migration.html. Install before numpy
+    install_requires = ['setuptools>=70.0.0', # security vulnerability with versions up to 69.1.1 
+                        # 'setuptools<60.0', # https://numpy.org/doc/stable/reference/distutils_status_migration.html. Install before numpy
                         'cnv-suite>=0.2.0',
                         'dash>=2.11.0',
                         'dash-bootstrap-components',