Add complete implementation of the classical PCA algorithm with covar…

Makefile

@@ -38,6 +38,7 @@ BUILD_TARGETS = \
 	llama-tokenize \
 	llama-vdot \
 	llama-cvector-generator \
+	llama-test-vanilla-pca \
 	llama-gen-docs \
 	tests/test-c.o
 
@@ -1479,6 +1480,12 @@ llama-cvector-generator: examples/cvector-generator/cvector-generator.cpp \
 	$(CXX) $(CXXFLAGS) -c $< -o $(call GET_OBJ_FILE, $<)
 	$(CXX) $(CXXFLAGS) $(filter-out %.h $<,$^) $(call GET_OBJ_FILE, $<) -o $@ $(LDFLAGS)
 
+# TODO: Move to tests
+llama-test-vanilla-pca: examples/cvector-generator/mini-tests/test-vanilla-pca.cpp \
+	$(OBJ_ALL)
+	$(CXX) $(CXXFLAGS) -c $< -o $(call GET_OBJ_FILE, $<)
+	$(CXX) $(CXXFLAGS) $(filter-out %.h $<,$^) $(call GET_OBJ_FILE, $<) -o $@ $(LDFLAGS)
+
 llama-convert-llama2c-to-ggml: examples/convert-llama2c-to-ggml/convert-llama2c-to-ggml.cpp \
 	$(OBJ_ALL)
 	$(CXX) $(CXXFLAGS) -c $< -o $(call GET_OBJ_FILE, $<)

examples/cvector-generator/cvector-generator.cpp

@@ -2,8 +2,7 @@
 #include "common.h"
 #include "llama.h"
 #include "ggml.h"
-#include "pca.hpp"
-#include "mean.hpp"
+#include "vanilla_pca.hpp"
 
 #ifdef GGML_USE_CUDA
 #include "ggml-cuda.h"

examples/cvector-generator/mini-tests/test-vanilla-pca.cpp

@@ -0,0 +1,116 @@
+
+#include "common.h"
+#include "llama.h"
+#include "ggml.h"
+#include "../vanilla_pca.hpp"
+
+#ifdef GGML_USE_CUDA
+#include "ggml-cuda.h"
+#endif
+
+#ifdef GGML_USE_METAL
+#include "ggml-metal.h"
+#endif
+
+#include <cstdio>
+#include <cstring>
+
+// Function to initialize ggml with optional GPU backend support
+struct ggml_context *initialize_ggml_context() {
+#ifdef GGML_USE_CUDA
+    struct ggml_init_params params = { .mem_size = 1024 * 1024, .mem_buffer = NULL, .use_gpu = true };
+    printf("Initializing with GPU backend...\n");
+#else
+    struct ggml_init_params params = { .mem_size = 1024 * 1024, .mem_buffer = NULL };
+    printf("Initializing with CPU backend...\n");
+#endif
+    return ggml_init(params);
+}
+
+// Helper function to create a tensor from a matrix
+struct ggml_tensor *create_tensor(struct ggml_context *ctx, float *data, int rows, int cols) {
+    struct ggml_tensor *tensor = ggml_new_tensor_2d(ctx, GGML_TYPE_F32, cols, rows);
+    memcpy(tensor->data, data, ggml_nbytes(tensor));
+    return tensor;
+}
+
+// Function to run PCA and print results
+void run_pca_test(struct ggml_context *ctx, float *matrix, int rows, int cols) {
+    struct ggml_tensor *input_tensor = create_tensor(ctx, matrix, rows, cols);
+
+    PCA::pca_params pca_params;
+    pca_params.n_threads = 8;
+    pca_params.n_batch = 20;
+    pca_params.n_iterations = 1000;
+    pca_params.tolerance = 1e-5;
+
+    PCA::pca_result result;
+    PCA::run_single_pca(pca_params, input_tensor, result);
+
+    printf("\nPrincipal components:\n");
+    float *b = (float *)result.principal_component->data;
+    for (int i = 0; i < result.principal_component->ne[0]; i++) {
+        printf("%f ", b[i]);
+    }
+    printf("\nEigenvalue: %f\n", result.explained_variance);
+}
+
+int main() {
+    // Initialize ggml context
+    struct ggml_context *ctx = initialize_ggml_context();
+    if (ctx == NULL) {
+        printf("Failed to initialize ggml context\n");
+        return 1;
+    }
+
+    // Define matrices
+    float input_matrix1[16] = {
+        -0.124132, 0.740341, -0.452462, 0.777050,
+        1.045571, -0.342142, -0.926047, -0.512965,
+        0.710109, 0.092479, 0.630075, 1.762937,
+        0.230954, -0.808937, 1.057424, 0.051361
+    };
+
+    float input_matrix2[100] = {
+        440152.493740, 122038.234845, 495176.910111, 34388.521115, 909320.402079, 258779.981600, 662522.284354, 311711.076089, 520068.021178, 546710.279343,
+        184854.455526, 969584.627765, 775132.823361, 939498.941564, 894827.350428, 597899.978811, 921874.235023, 88492.502052, 195982.862419, 45227.288911,
+        325330.330763, 388677.289689, 271349.031774, 828737.509152, 356753.326694, 280934.509687, 542696.083158, 140924.224975, 802196.980754, 74550.643680,
+        986886.936601, 772244.769297, 198715.681534, 5522.117124, 815461.428455, 706857.343848, 729007.168041, 771270.346686, 74044.651734, 358465.728544,
+        115869.059525, 863103.425876, 623298.126828, 330898.024853, 63558.350286, 310982.321716, 325183.322027, 729606.178338, 637557.471355, 887212.742576,
+        472214.925162, 119594.245938, 713244.787223, 760785.048617, 561277.197569, 770967.179955, 493795.596364, 522732.829382, 427541.018359, 25419.126744,
+        107891.426993, 31429.185687, 636410.411264, 314355.981076, 508570.691165, 907566.473926, 249292.229149, 410382.923036, 755551.138543, 228798.165492,
+        76979.909829, 289751.452914, 161221.287254, 929697.652343, 808120.379564, 633403.756510, 871460.590188, 803672.076899, 186570.058886, 892558.998490,
+        539342.241916, 807440.155164, 896091.299923, 318003.474972, 110051.924528, 227935.162542, 427107.788626, 818014.765922, 860730.583256, 6952.130531,
+        510747.302578, 417411.003149, 222107.810471, 119865.367334, 337615.171404, 942909.703913, 323202.932021, 518790.621743, 703018.958895, 363629.602379
+    };
+
+    float input_matrix3[9] = {
+        0.374540, 0.950714, 0.731994,
+        0.598658, 0.156019, 0.155995,
+        0.058084, 0.866176, 0.601115
+    };
+
+    float input_matrix4[9] = {
+        10.000000, 0.000000, 0.000000,
+        0.000000, 5.000000, 0.000000,
+        0.000000, 0.000000, 1.000000
+    };
+
+    // Run PCA for each matrix
+    printf("Testing Matrix 1:\n");
+    run_pca_test(ctx, input_matrix1, 4, 4);
+
+    printf("\nTesting Matrix 2:\n");
+    run_pca_test(ctx, input_matrix2, 10, 10);
+
+    printf("\nTesting Matrix 3:\n");
+    run_pca_test(ctx, input_matrix3, 3, 3);
+
+    printf("\nTesting Matrix 4:\n");
+    run_pca_test(ctx, input_matrix4, 3, 3);
+
+    // Cleanup
+    ggml_free(ctx);
+    return 0;
+}
+