Added endpoint alias to file deletion events (#45)

.deprecated_files

@@ -21,3 +21,4 @@ setup.cfg
 
 .pylintrc
 .flake8
+.editorconfig

.devcontainer/devcontainer.json

@@ -10,37 +10,15 @@
 		"vscode": {
 			// Set *default* container specific settings.json values on container create.
 			"settings": {
+				"files.eol": "\n",
 				"terminal.integrated.profiles.linux": {
 					"bash": {
 						"path": "/bin/bash"
 					}
 				},
-				"sqltools.connections": [
-					{
-						"name": "Container database",
-						"driver": "PostgreSQL",
-						"previewLimit": 50,
-						"server": "localhost",
-						"port": 5432,
-						"database": "postgres",
-						"username": "postgres",
-						"password": "postgres"
-					}
-				],
 				"python.pythonPath": "/usr/local/bin/python",
 				"python.languageServer": "Pylance",
-				"python.linting.enabled": true,
-				"python.linting.pylintEnabled": true,
-				"python.formatting.autopep8Path": "/usr/local/py-utils/bin/autopep8",
-				"python.formatting.blackPath": "/usr/local/py-utils/bin/black",
-				"python.formatting.yapfPath": "/usr/local/py-utils/bin/yapf",
-				"python.formatting.provider": "black",
 				"python.analysis.typeCheckingMode": "basic",
-				"python.linting.banditPath": "/usr/local/py-utils/bin/bandit",
-				"python.linting.mypyPath": "/usr/local/py-utils/bin/mypy",
-				"python.linting.pycodestylePath": "/usr/local/py-utils/bin/pycodestyle",
-				"python.linting.pydocstylePath": "/usr/local/py-utils/bin/pydocstyle",
-				"python.linting.pylintPath": "/usr/local/py-utils/bin/pylint",
 				"python.testing.pytestPath": "/usr/local/py-utils/bin/pytest",
 				"python.testing.pytestArgs": [
 					"--profile"
@@ -52,6 +30,7 @@
 				"editor.rulers": [
 					88
 				],
+				"editor.defaultFormatter": "ms-python.black-formatter",
 				"licenser.license": "Custom",
 				"licenser.customHeaderFile": "/workspace/.devcontainer/license_header.txt"
 			},
@@ -60,7 +39,6 @@
 				"mikestead.dotenv",
 				"ms-azuretools.vscode-docker",
 				"ms-python.python",
-				"ms-python.isort",
 				"ms-python.vscode-pylance",
 				"ms-toolsai.jupyter",
 				"njpwerner.autodocstring",
@@ -73,7 +51,9 @@
 				"yzhang.markdown-all-in-one",
 				"visualstudioexptteam.vscodeintellicode",
 				"ymotongpoo.licenser",
-				"editorconfig.editorconfig"
+				"charliermarsh.ruff",
+				"ms-python.black-formatter",
+				"ms-python.mypy-type-checker"
 			]
 		}
 	},

.gitignore

@@ -133,6 +133,12 @@ dmypy.json
 # ignore VS Code settings:
 .vscode/
 
+# key stores
+*.key
+*.rnd
+.keystore
+.ssl/
+
 # desktop settings and thumbnails
 .DS_Store
 desktop.ini

.mandatory_files

@@ -7,7 +7,6 @@
 
 .devcontainer/dev_launcher
 .devcontainer/docker-compose.yml
-.devcontainer/Dockerfile
 
 tests/__init__.py
 tests/fixtures/__init__.py

.static_files

@@ -40,7 +40,6 @@ scripts/README.md
 example_data/README.md
 
 .coveragerc
-.editorconfig
 .gitattributes
 .gitignore
 .mypy.ini

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "ghga_event_schemas"
-version = "1.0.0"
+version = "2.0.0"
 description = "GHGA Event Schemas: A package that collects schemas used for events exchanged between GHGA service."
 readme = "README.md"
 authors = [

scripts/license_checker.py

@@ -88,6 +88,9 @@
     "xml",
     "yaml",
     "yml",
+    "tsv",
+    "fastq",
+    "gz",
 ]
 
 # exclude any files with names that match any of the following regex:

src/ghga_event_schemas/pydantic_.py

@@ -159,7 +159,7 @@ class FileUploadReceived(UploadDateModel):
     s3_endpoint_alias: str = Field(
         ...,
         description="Alias for the object storage location where the given object is stored."
-        + "This can be uniquely mapped to an endpoint URL in the service configuration.",
+        + "This can be uniquely mapped to an endpoint configuration in the service.",
     )
     submitter_public_key: str = Field(
         ...,
@@ -194,7 +194,7 @@ class FileUploadValidationSuccess(UploadDateModel):
     s3_endpoint_alias: str = Field(
         ...,
         description="Alias for the object storage location where the given object is stored."
-        + "This can be uniquely mapped to an endpoint URL in the service configuration.",
+        + "This can be uniquely mapped to an endpoint configuration in the service.",
     )
     decrypted_size: int = Field(
         ...,
@@ -260,7 +260,7 @@ class FileUploadValidationFailure(UploadDateModel):
     s3_endpoint_alias: str = Field(
         ...,
         description="Alias for the object storage location where the given object is stored."
-        + "This can be uniquely mapped to an endpoint URL in the service configuration.",
+        + "This can be uniquely mapped to an endpoint configuration in the service.",
     )
     reason: str = Field(
         ...,
@@ -314,7 +314,7 @@ class NonStagedFileRequested(BaseModel):
     s3_endpoint_alias: str = Field(
         ...,
         description="Alias for the object storage location where the given object is stored."
-        + "This can be uniquely mapped to an endpoint URL in the service configuration.",
+        + "This can be uniquely mapped to an endpoint configuration in the service.",
     )
     decrypted_sha256: str = Field(
         ...,
@@ -380,6 +380,11 @@ class FileDeletionRequested(BaseModel):
     file_id: str = Field(
         ..., description="The public ID of the file as present in the metadata catalog."
     )
+    s3_endpoint_alias: str = Field(
+        ...,
+        description="Alias for the object storage location where the given object is stored."
+        + "This can be uniquely mapped to an endpoint configuration in the service.",
+    )
     model_config = ConfigDict(title="file_deletion_requested")