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RNAseq_course_project
RNAseq_course_project PublicThe aim of this project is to assemble the transcriptome of a cellular subtype (paraclonal subpopulation) of cancer stem cells (CSC) in non-small cell lung cancer (NSCLC).
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DigitalDarkroom
DigitalDarkroom PublicThis repository contains the project that was done for the "Advanced Python" course in the context of the Bioinformatics and Computational Biology Master (UniBE and Unifr))
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RhoAModelling
RhoAModelling PublicThis repository contains the code to fit a biological model (ODE system) to the experimental data of RhoA activity obtained by Heydasch et al. (2023) for their research.
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SBINN
SBINN PublicThis repository contains the code to implement a Systems Biology Neural Network. In particular, various extensions designed to improve convergence and enhance model performance during training were…
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DataDrivenEquationDiscovery
DataDrivenEquationDiscovery PublicThe goal of this project is to gain data-driven insights into signaling mechanisms using recent machine learning tools such as UDEs (ODE with neural network approximator) and SINDy-based equation d…
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