Test #331
Workflow file for this run
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| name: Test | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| # Trigger on pull requests. | |
| pull_request: | |
| # Trigger on pushes to the mainline branches. This prevents building commits twice when the pull | |
| # request source branch is in the same repository. | |
| push: | |
| branches: | |
| - "trunk" | |
| - "trunk-major" | |
| # Trigger on request. | |
| workflow_dispatch: | |
| # Weekly builds on the trunk branch to check that the examples continue to work with the latest | |
| # development version of HOOMD. | |
| schedule: | |
| - cron: '0 18 * * 1' | |
| jobs: | |
| start_action_runners: | |
| name: Start action runners | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: "Use jetstream2-admin/start" | |
| uses: glotzerlab/jetstream2-admin/[email protected] | |
| with: | |
| OS_APPLICATION_CREDENTIAL_ID: ${{ secrets.OS_APPLICATION_CREDENTIAL_ID }} | |
| OS_APPLICATION_CREDENTIAL_SECRET: ${{ secrets.OS_APPLICATION_CREDENTIAL_SECRET }} | |
| number: 1 | |
| execute_notebooks: | |
| name: Execute notebooks | |
| runs-on: [self-hosted,jetstream2,CPU] | |
| container: | |
| image: glotzerlab/software:nompi | |
| options: -u 0 | |
| steps: | |
| - name: Clean workspace | |
| run: ( shopt -s dotglob nullglob; rm -rf ./* ) | |
| shell: bash | |
| # build the HOOMD trunk-minor branch to test the tutorials on the latest version | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| with: | |
| path: hoomd | |
| ref: trunk-major | |
| repository: glotzerlab/hoomd-blue | |
| submodules: true | |
| - name: Make build directory | |
| run: mkdir build | |
| working-directory: hoomd | |
| - name: Configure | |
| run: >- | |
| cmake | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DENABLE_GPU=off | |
| -DENABLE_MPI=off | |
| -DENABLE_TBB=off | |
| -DBUILD_TESTING=off | |
| -DENABLE_LLVM=on | |
| ../ | |
| working-directory: hoomd/build | |
| - name: Compile | |
| run: make -j $(($(getconf _NPROCESSORS_ONLN) + 2)) | |
| working-directory: hoomd/build | |
| - name: Display hoomd version | |
| run: python3 -c "import hoomd; print(hoomd.version.version, hoomd.version.git_sha1)" | |
| env: | |
| PYTHONPATH: ${{ github.workspace }}/hoomd/build | |
| # clone the tutorials and run them | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| with: | |
| path: notebooks | |
| - name: List notebooks | |
| run: ls **/*.ipynb | |
| working-directory: notebooks | |
| - name: Execute notebooks | |
| run: 'for i in */; do echo "Running notebooks in: $i" && jupyter nbconvert --execute --inplace $i/*.ipynb || exit 1; done' | |
| working-directory: notebooks | |
| env: | |
| PYTHONPATH: ${{ github.workspace }}/hoomd/build | |
| # This check is very basic, but we don't want to use `python -W error` as it will also catch any | |
| # warnings generated inside nbconvert and its dependencies. | |
| - name: Check for warnings | |
| run: | | |
| has_warnings=0 | |
| for file in **/*.ipynb | |
| do | |
| grep Warning $file && echo "::error file=${file}::Has deprecation warnings" && has_warnings=1 | |
| done | |
| exit ${has_warnings} | |
| working-directory: notebooks | |
| # notify developers if the scheduled check fails | |
| - name: Slack notification | |
| if: ${{ github.event_name == 'schedule' && (failure() || cancelled()) }} | |
| uses: 8398a7/[email protected] | |
| with: | |
| status: ${{ job.status }} | |
| fields: workflow,job,message,commit | |
| mention: channel | |
| if_mention: failure,cancelled | |
| channel: '#dev-hoomd-notifications' | |
| username: Github Action | |
| author_name: '' | |
| job_name: Execute notebooks | |
| env: | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| - name: Clean workspace | |
| run: ( shopt -s dotglob nullglob; rm -rf ./* ) | |
| shell: bash | |
| - name: Clean HOME | |
| run: ( shopt -s dotglob nullglob; rm -rf $HOME/* ) | |
| shell: bash |