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astrofrog authored Aug 11, 2023
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Experimental Glue medical plugin
================================

|Build Status| |Build status|
|Build Status|

Requirements
------------
Expand All @@ -14,21 +14,16 @@ instructions on installing glue.
In addition, this plugin requires the
`GDCM <http://gdcm.sourceforge.net/>`__ and
`pydicom <http://pydicom.readthedocs.io/en/stable/>`__ packages to be
installed. If you are using conda, you can easily install these with:

::
installed. If you are using conda, you can easily install these with::

conda install -c conda-forge gdcm pydicom

Installing
----------

To install the latest developer version of the plugin from the git
repository, you can do:

::
To install the latest version of this plugin, you can do::

pip install https://github.com/glue-viz/glue-medical/archive/master.zip
pip install glue-medical

This will auto-register the plugin with Glue.

Expand All @@ -37,15 +32,11 @@ Using

At the moment, this plugin provides a reader for DICOM files. You can
give glue either a DICOM file or a directory containing DICOM files. For
example, you can start glue using:

::
example, you can start glue using::

glue mydata.dcm

or

::
or::

glue directory_with_dicom_files

Expand All @@ -61,16 +52,12 @@ behavior.
Testing
-------

To run the tests, do:

::
To run the tests, do::

py.test glue_medical
pytest glue_medical

at the root of the repository. This requires the
`pytest <http://pytest.org>`__ module to be installed.

.. |Build Status| image:: https://travis-ci.org/glue-viz/glue-medical.svg
:target: https://travis-ci.org/glue-viz/glue-medical?branch=master
.. |Build status| image:: https://ci.appveyor.com/api/projects/status/2yu53cb15ifilio6/branch/master?svg=true
:target: https://ci.appveyor.com/project/glue-viz/glue-medical/branch/master
.. |Build Status| image:: https://github.com/glue-viz/glue-medical/actions/workflows/ci_workflows.yml/badge.svg
:target: https://github.com/glue-viz/glue-medical/actions/workflows/ci_workflows.yml

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