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gobikrishnan-s3141 authored Dec 29, 2024
1 parent 5b1f12b commit e554341
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10 changes: 10 additions & 0 deletions R.dockerfile
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Expand Up @@ -4,11 +4,17 @@ FROM ubuntu:latest

# install system dep
RUN apt-get update && apt-get install -y --no-install-recommends \
build-essential\
cmake \
clang \
llvm \
r-base \
r-base-dev \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libcairo2-dev \
libxt-dev \
libfontconfig1-dev \
libharfbuzz-dev \
libfribidi-dev \
Expand All @@ -18,6 +24,10 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
libjpeg-dev \
&& rm -rf /var/lib/apt/lists/*

## set up env to use clang (experimental)
#ENV CC=clang
#ENV CXX=clang++

# install core & required R pkgs
RUN R -e "install.packages(c( \
'BiocManager', \
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -24,4 +24,4 @@ podman run -it ubuntu:latest
```
Replace ubuntu:latest with other pre-built official tags found [here](https://hub.docker.com/search?badges=official)

*Never run into "It works on my machine moment"*
*Never run into "It works on my machine!" moment*
2 changes: 1 addition & 1 deletion bsh.dockerfile
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@@ -1,4 +1,4 @@
# ubuntu base
# ubuntu base - minimal bioinformatics workstation
FROM ubuntu:rolling

# install system dep
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2 changes: 1 addition & 1 deletion sh.dockerfile
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@@ -1,4 +1,4 @@
# alpine linux
# alpine linux - minimal server/workstation
FROM alpine:latest

# install dependencies
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