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83 Open 570 Closed
83 Open 570 Closed
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Issues list

cannot find the common mouse alleles with "pvacseq valid_alleles"
#1210 opened Feb 24, 2025 by Xiao-Zhong
1
Add a non-human tests to pVACsplice
#1207 opened Feb 19, 2025 by susannasiebert
1
@mhoang22
investigate TLimmuno2 prediction_algorithms
#1205 opened Feb 18, 2025 by mhoang22
Add a way to sort/ filter by the genes of interest file
#1202 opened Feb 13, 2025 by ksinghal28
Console warnings/errors bug report / hotfix PR pVACview
#1199 opened Feb 7, 2025 by susannasiebert
integrate pVACcompare to pVACtools
#1194 opened Feb 4, 2025 by mhoang22
1
@ldhtnp
1
package the peptide order form assist scripts (create report and color peptide) into a tool
#1193 opened Feb 4, 2025 by mhoang22
1
Add support for calculating percentile ranks on a consistent set of reference peptides
#1192 opened Feb 4, 2025 by malachig
Add new aggregate report tiers "ProbAA" and "RefMatch" aggregate report pVACview
#1188 opened Jan 31, 2025 by susannasiebert 5.3.0
4
Investigate TLStab (pMHC stability predictor) , TLImm (immunogenicity predictor) prediction_algorithms
#1183 opened Jan 28, 2025 by mhoang22
Reword filtering parameters to make distinction of usage for hard-filtering and tiering/prioritizing clear.
#1182 opened Jan 28, 2025 by susannasiebert 5.3.0
Create documentation for the download_cwls/wdls commands documentation
#1175 opened Jan 7, 2025 by susannasiebert 5.3.0
Consider HLApollo for integration grant prediction_algorithms
#1172 opened Jan 6, 2025 by susannasiebert
Error: No command specified bug report / hotfix PR
#1158 opened Nov 19, 2024 by Geneece
6
Plans for adding NetTCR-2.0? prediction_algorithms
#1141 opened Sep 7, 2024 by lukaas33
1
Update pVACview documentation (vignette) and pVACview Tutorials page to mention anchor weights and anchor distribution tables documentation
#1140 opened Sep 5, 2024 by susannasiebert 5.3.0
1
pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ? bug report / hotfix PR
#1118 opened Jun 26, 2024 by yiolino
8
Potential improvements to the pVACview NeoFox module pVACview
#1098 opened Apr 30, 2024 by susannasiebert
4 of 13 tasks
Consider integration of MixMHCPred2 prediction_algorithms
#1093 opened Apr 15, 2024 by malachig
3
Output a visual representation of the graph after all spacers have been tested pVACvector
#1089 opened Apr 5, 2024 by susannasiebert 5.3.0
1
QUESTION: How to integrate netchop results to aditionnally filter possible peptides
#1064 opened Feb 19, 2024 by PierreLaplante
Overview of possible new prediction algorithms and their installation/run requirements
#1056 opened Jan 26, 2024 by susannasiebert
2
Consider integration with ACE a tool for generation of ELISpot configurations (peptide-pool assignments) prediction_algorithms
#1051 opened Jan 16, 2024 by malachig
Investigate PRIME prediction algorithm prediction_algorithms
#1029 opened Sep 25, 2023 by jhundal
1
Investigate DeepHLApan prediction algorithm grant prediction_algorithms
#1016 opened Aug 9, 2023 by susannasiebert
ProTip! Follow long discussions with comments:>50.