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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -4,27 +4,84 @@ | |
| connection: local | ||
| vars: | ||
| NAMESPACE: galaxy | ||
| AFFINITY: | ||
| affinity: | ||
| podAffinity: | ||
| preferredDuringSchedulingIgnoredDuringExecution: | ||
| - weight: 100 | ||
| podAffinityTerm: | ||
| topologyKey: "kubernetes.io/hostname" | ||
| labelSelector: | ||
| matchExpressions: | ||
| - key: app.kubernetes.io/instance | ||
| operator: In | ||
| values: | ||
| - galaxy | ||
| - postgres-operator | ||
| - rabbitmq-operator | ||
| admin_users: "{{ galaxy_admin_users | default('[email protected]') }}" | ||
| brand: "{{ galaxy_brand | default('IM Deployed Galaxy K8s Cluster') }}" | ||
| max_mem: "{{ galaxy_max_mem | default(0) }}" | ||
| max_cores: "{{ galaxy_max_cores | default(0) }}" | ||
| tasks: | ||
|
|
||
| - name: "Check if postgres-operator is already deployed" | ||
| command: helm status postgres-operator -n {{ NAMESPACE }} | ||
| register: deployed | ||
| failed_when: deployed.rc != 0 and deployed.rc != 1 | ||
| changed_when: false | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - when: deployed.rc == 1 | ||
| block: | ||
|
|
||
| - name: Create postgres-operator helm chart values file | ||
| copy: | ||
| dest: /opt/postgres_values.yaml | ||
| mode: '644' | ||
| content: "{{ AFFINITY | to_nice_yaml }}" | ||
|
|
||
| - name: Add helm repo postgres-operator-charts | ||
| command: helm repo add postgres-operator-charts https://opensource.zalando.com/postgres-operator/charts/postgres-operator | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: Deploy postgres-operator | ||
| command: helm install -n {{ NAMESPACE }} --create-namespace postgres-operator postgres-operator-charts/postgres-operator --version 1.9.0 -f /opt/postgres_values.yaml --wait | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: "Check if rabbitmq-operator is already deployed" | ||
| command: helm status rabbitmq-operator -n {{ NAMESPACE }} | ||
| register: deployed | ||
| failed_when: deployed.rc != 0 and deployed.rc != 1 | ||
| changed_when: false | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - when: deployed.rc == 1 | ||
| block: | ||
|
|
||
| - name: Create rabbitmq-operator helm chart values file | ||
| copy: | ||
| dest: /opt/rabbitmq_values.yaml | ||
| mode: '644' | ||
| content: | | ||
| clusterOperator: | ||
| {{ AFFINITY | to_nice_yaml(indent=2) }} | ||
| msgTopologyOperator: | ||
| {{ AFFINITY | to_nice_yaml(indent=2) }} | ||
| - name: Add helm repo bitnami | ||
| command: helm repo add bitnami https://charts.bitnami.com/bitnami | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: Deploy postgres-operator | ||
| command: helm install -n {{ NAMESPACE }} --create-namespace rabbitmq-operator bitnami/rabbitmq-cluster-operator --version 2.6.12 -f /opt/rabbitmq_values.yaml | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: "Check if galaxy-cvmfs is already deployed" | ||
| command: helm status galaxy-cvmfs -n {{ NAMESPACE }} | ||
|
|
@@ -51,32 +108,17 @@ | |
| name: cvmfs-alien-cache | ||
| # try to pack all the pods in the same nodes | ||
| controllerplugin: | ||
| {{ AFFINITY | to_nice_yaml(indent=2) }} | ||
| nodeplugin: | ||
| {{ AFFINITY | to_nice_yaml(indent=2) }} | ||
| - name: Add helm repo galaxy | ||
| command: helm repo add galaxy https://raw.githubusercontent.com/CloudVE/helm-charts/master/ | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: Deploy Galaxy CVMFS CSI | ||
| command: helm install --create-namespace -n {{ NAMESPACE }} galaxy-cvmfs galaxy/galaxy-cvmfs-csi --wait -f /opt/galaxy-cvmfs-csi_values.yaml --version 2.2.0 | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
|
|
@@ -91,14 +133,6 @@ | |
| - when: deployed.rc == 1 | ||
| block: | ||
|
|
||
| - name: Remove GB from max_mem | ||
| set_fact: | ||
| max_mem: "{{ max_mem[:-2] | float - 1 }}" | ||
|
|
@@ -114,6 +148,10 @@ | |
| cvmfs: | ||
| deploy: false | ||
| storageClassName: galaxy-cvmfs | ||
| postgresql: | ||
| deploy: false | ||
| rabbitmq: | ||
| deploy: false | ||
| configs: | ||
| galaxy.yml: | ||
| galaxy: | ||
|
|
@@ -128,47 +166,15 @@ | |
| {{ 'max_cores: ' ~ max_cores if max_cores | int > 0 else '# no max_cores' }} | ||
| {{ 'max_mem: ' ~ max_mem if max_mem | int > 0 else '# no max_mem' }} | ||
| # try to pack all the pods in the same nodes | ||
| {{ AFFINITY | to_nice_yaml(indent=2) }} | ||
| - name: Add helm repo galaxy | ||
| command: helm repo add galaxy https://raw.githubusercontent.com/CloudVE/helm-charts/master/ | ||
| environment: | ||
| KUBECONFIG: /etc/kubernetes/admin.conf | ||
|
|
||
| - name: Deploy Galaxy | ||
| command: helm install --create-namespace -n {{ NAMESPACE }} galaxy galaxy/galaxy --timeout 15m -f /opt/galaxy_values.yaml --version 5.9.0 | ||
| args: | ||
| chdir: /opt/galaxy-helm/galaxy | ||
| environment: | ||
|
|
||
