add writing of extra text files for PACS import

examples/fileio/convert_kul_ct_recon_to_dicom.py

@@ -19,6 +19,8 @@
 parser.add_argument('--kul_var_name',       help = 'name of recon variable in sav file', default = 'recon')
 parser.add_argument('--series_desc_prefix', help = 'prefix for dcm series description', 
                     default = '(KUL motion corrected)')
+parser.add_argument('--importer_computer',  help = 'PACS import computer', default = None)
+parser.add_argument('--importer_login',     help = 'PACS import login',    default = None)
 
 args       = parser.parse_args()
 output_dir = args.output_dir
@@ -54,8 +56,35 @@
 # write the dicoms
 # the number of tags to be copied from the original recon can be extented
 new_series_desc = args.series_desc_prefix + ' ' + ref_dcm.firstdcmheader.SeriesDescription
-pymf.write_3d_static_dicom(kul_recon, output_dir, 
-                           affine            = ref_dcm.affine,
-                           SeriesDescription = new_series_desc,
-                           modality          = ref_dcm.firstdcmheader.Modality,
-                           **dcm_header_kwargs)
+dcm_out_fnames = pymf.write_3d_static_dicom(kul_recon, output_dir, 
+                                            affine            = ref_dcm.affine,
+                                            SeriesDescription = new_series_desc,
+                                            modality          = ref_dcm.firstdcmheader.Modality,
+                                            **dcm_header_kwargs)
+
+# for PACS import we have to write two additional text files
+if (args.importer_computer is not None) and (args.importer_login is not None):
+  dcm_props = {}
+  dcm_props['import.type']       = 'cd'
+  dcm_props['study.size']        = kul_recon.shape[2] 
+  dcm_props['version']           = 2
+  dcm_props['study.uid']         = ref_dcm.firstdcmheader.StudyInstanceUID
+  dcm_props['institution']       = 'KUL'
+  dcm_props['importer.computer'] = args.importer_computer
+  dcm_props['study.date']        = ref_dcm.firstdcmheader.StudyDate[:8]
+  dcm_props['importer.login']    = args.importer_login
+  dcm_props['patient.ead']       = ref_dcm.firstdcmheader.PatientID
+  dcm_props['file.list']         = 'filelist.txt'
+  dcm_props['werkomgeving']      = 'UZL'
+  dcm_props['study.time']        = ref_dcm.firstdcmheader.StudyTime[:6]
+  dcm_props['modality']          = ref_dcm.firstdcmheader.Modality
+  dcm_props['study.description'] = ref_dcm.firstdcmheader.StudyDescription
+
+  with open(os.path.join(output_dir, 'dicomimport.properties'), 'w') as f:
+    for key, value in dcm_props.items():
+      f.write(key + '=' + str(value) + '\n')
+
+  with open(os.path.join(output_dir, 'filelist.txt'), 'w') as f:
+    for fname in dcm_out_fnames:
+      f.write(os.path.basename(fname) + '\n')
+    f.write('COMPLETED')