Update docs

gyselax · Nov 20, 2023 · 8230ec6 · 8230ec6
1 parent 12ffbd8
commit 8230ec6
Show file tree

Hide file tree

Showing 5 changed files with 91 additions and 88 deletions.
diff --git a/classSpeciesInformation_1_1Impl-members.html b/classSpeciesInformation_1_1Impl-members.html
@@ -111,7 +111,7 @@
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ielec</b>() const (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0"><td class="entry"><b>Impl</b> (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Impl</b>(Impl&lt; OMemorySpace &gt; const &amp;impl) (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>Impl</b>(ddc::Chunk&lt; int, discrete_domain_type &gt; charge, ddc::Chunk&lt; double, discrete_domain_type &gt; mass, ddc::Chunk&lt; double, discrete_domain_type &gt; perturb_amplitude, ddc::Chunk&lt; int, discrete_domain_type &gt; perturb_mode) (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Impl</b>(ddc::Chunk&lt; int, discrete_domain_type, ddc::KokkosAllocator&lt; int, MemorySpace &gt;&gt; charge, ddc::Chunk&lt; double, discrete_domain_type, ddc::KokkosAllocator&lt; double, MemorySpace &gt;&gt; mass, ddc::Chunk&lt; double, discrete_domain_type, ddc::KokkosAllocator&lt; double, MemorySpace &gt;&gt; perturb_amplitude, ddc::Chunk&lt; int, discrete_domain_type, ddc::KokkosAllocator&lt; int, MemorySpace &gt;&gt; perturb_mode) (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>masses</b>() const (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0"><td class="entry"><b>perturb_amplitudes</b>() const (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>perturb_modes</b>() const (defined in <a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a>)</td><td class="entry"><a class="el" href="classSpeciesInformation_1_1Impl.html">SpeciesInformation::Impl&lt; MemorySpace &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>

diff --git a/classSpeciesInformation_1_1Impl.html b/classSpeciesInformation_1_1Impl.html
@@ -120,24 +120,24 @@
 template&lt;class OMemorySpace &gt; </td></tr>
 <tr class="memitem:a788f54c43e25317f947aa8be9716c3bc"><td class="memTemplItemLeft" align="right" valign="top">&#160;</td><td class="memTemplItemRight" valign="bottom"><b>Impl</b> (<a class="el" href="classSpeciesInformation_1_1Impl.html">Impl</a>&lt; OMemorySpace &gt; const &amp;impl)</td></tr>
 <tr class="separator:a788f54c43e25317f947aa8be9716c3bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aee061508e334dfda1ec99068b18d8909"><td class="memItemLeft" align="right" valign="top"><a id="aee061508e334dfda1ec99068b18d8909"></a>
-&#160;</td><td class="memItemRight" valign="bottom"><b>Impl</b> (ddc::Chunk&lt; int, discrete_domain_type &gt; charge, ddc::Chunk&lt; double, discrete_domain_type &gt; mass, ddc::Chunk&lt; double, discrete_domain_type &gt; perturb_amplitude, ddc::Chunk&lt; int, discrete_domain_type &gt; perturb_mode)</td></tr>
-<tr class="separator:aee061508e334dfda1ec99068b18d8909"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a926e1d36257535d9c850fadd85f45dd2"><td class="memItemLeft" align="right" valign="top"><a id="a926e1d36257535d9c850fadd85f45dd2"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>Impl</b> (ddc::Chunk&lt; int, discrete_domain_type, ddc::KokkosAllocator&lt; int, MemorySpace &gt;&gt; charge, ddc::Chunk&lt; double, discrete_domain_type, ddc::KokkosAllocator&lt; double, MemorySpace &gt;&gt; mass, ddc::Chunk&lt; double, discrete_domain_type, ddc::KokkosAllocator&lt; double, MemorySpace &gt;&gt; perturb_amplitude, ddc::Chunk&lt; int, discrete_domain_type, ddc::KokkosAllocator&lt; int, MemorySpace &gt;&gt; perturb_mode)</td></tr>
+<tr class="separator:a926e1d36257535d9c850fadd85f45dd2"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad069f5667f3d88ab36856bd941c6e937"><td class="memItemLeft" align="right" valign="top"><a id="ad069f5667f3d88ab36856bd941c6e937"></a>
 KOKKOS_FUNCTION discrete_element_type&#160;</td><td class="memItemRight" valign="bottom"><b>ielec</b> () const</td></tr>
 <tr class="separator:ad069f5667f3d88ab36856bd941c6e937"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a22075762bac76656386615ff21f71bd8"><td class="memItemLeft" align="right" valign="top"><a id="a22075762bac76656386615ff21f71bd8"></a>
-ddc::ChunkSpan&lt; const int, discrete_domain_type &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>charges</b> () const</td></tr>
-<tr class="separator:a22075762bac76656386615ff21f71bd8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0cee25bda8e8c98cb2e4f6b1f1bdfbaa"><td class="memItemLeft" align="right" valign="top"><a id="a0cee25bda8e8c98cb2e4f6b1f1bdfbaa"></a>
-ddc::ChunkSpan&lt; const double, discrete_domain_type &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>masses</b> () const</td></tr>
-<tr class="separator:a0cee25bda8e8c98cb2e4f6b1f1bdfbaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a447bc6c55e4a471376bfdfcbd04db742"><td class="memItemLeft" align="right" valign="top"><a id="a447bc6c55e4a471376bfdfcbd04db742"></a>
-ddc::ChunkSpan&lt; const double, discrete_domain_type &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>perturb_amplitudes</b> () const</td></tr>
-<tr class="separator:a447bc6c55e4a471376bfdfcbd04db742"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3bf40fa531902e47b82ce46109df9259"><td class="memItemLeft" align="right" valign="top"><a id="a3bf40fa531902e47b82ce46109df9259"></a>
-ddc::ChunkSpan&lt; const int, discrete_domain_type &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>perturb_modes</b> () const</td></tr>
-<tr class="separator:a3bf40fa531902e47b82ce46109df9259"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6fa19e2bcac84772f4de38323e4430e3"><td class="memItemLeft" align="right" valign="top"><a id="a6fa19e2bcac84772f4de38323e4430e3"></a>
+auto&#160;</td><td class="memItemRight" valign="bottom"><b>charges</b> () const</td></tr>
+<tr class="separator:a6fa19e2bcac84772f4de38323e4430e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5fea032a19715a668e86acfa0a4e93a"><td class="memItemLeft" align="right" valign="top"><a id="ab5fea032a19715a668e86acfa0a4e93a"></a>
+auto&#160;</td><td class="memItemRight" valign="bottom"><b>masses</b> () const</td></tr>
+<tr class="separator:ab5fea032a19715a668e86acfa0a4e93a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0eb655bf420dc3a05d2cbb1e176cf279"><td class="memItemLeft" align="right" valign="top"><a id="a0eb655bf420dc3a05d2cbb1e176cf279"></a>
+auto&#160;</td><td class="memItemRight" valign="bottom"><b>perturb_amplitudes</b> () const</td></tr>
+<tr class="separator:a0eb655bf420dc3a05d2cbb1e176cf279"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeaa6f310ad69c7e977214d455bb9a039"><td class="memItemLeft" align="right" valign="top"><a id="aeaa6f310ad69c7e977214d455bb9a039"></a>
+auto&#160;</td><td class="memItemRight" valign="bottom"><b>perturb_modes</b> () const</td></tr>
+<tr class="separator:aeaa6f310ad69c7e977214d455bb9a039"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <hr/>The documentation for this class was generated from the following file:<ul>
 <li>/__w/gyselalibxx/gyselalibxx/code_branch/src/speciesinfo/<a class="el" href="species__info_8hpp_source.html">species_info.hpp</a></li>

diff --git a/classSpeciesInformation_1_1Impl.js b/classSpeciesInformation_1_1Impl.js
@@ -2,11 +2,11 @@ var classSpeciesInformation_1_1Impl =
 [
     [ "discrete_dimension_type", "classSpeciesInformation_1_1Impl.html#a79dd22b07e0b671a5f85b7a1d47c10a4", null ],
     [ "Impl", "classSpeciesInformation_1_1Impl.html#a788f54c43e25317f947aa8be9716c3bc", null ],
-    [ "Impl", "classSpeciesInformation_1_1Impl.html#aee061508e334dfda1ec99068b18d8909", null ],
+    [ "Impl", "classSpeciesInformation_1_1Impl.html#a926e1d36257535d9c850fadd85f45dd2", null ],
     [ "ielec", "classSpeciesInformation_1_1Impl.html#ad069f5667f3d88ab36856bd941c6e937", null ],
-    [ "charges", "classSpeciesInformation_1_1Impl.html#a22075762bac76656386615ff21f71bd8", null ],
-    [ "masses", "classSpeciesInformation_1_1Impl.html#a0cee25bda8e8c98cb2e4f6b1f1bdfbaa", null ],
-    [ "perturb_amplitudes", "classSpeciesInformation_1_1Impl.html#a447bc6c55e4a471376bfdfcbd04db742", null ],
-    [ "perturb_modes", "classSpeciesInformation_1_1Impl.html#a3bf40fa531902e47b82ce46109df9259", null ],
+    [ "charges", "classSpeciesInformation_1_1Impl.html#a6fa19e2bcac84772f4de38323e4430e3", null ],
+    [ "masses", "classSpeciesInformation_1_1Impl.html#ab5fea032a19715a668e86acfa0a4e93a", null ],
+    [ "perturb_amplitudes", "classSpeciesInformation_1_1Impl.html#a0eb655bf420dc3a05d2cbb1e176cf279", null ],
+    [ "perturb_modes", "classSpeciesInformation_1_1Impl.html#aeaa6f310ad69c7e977214d455bb9a039", null ],
     [ "Impl", "classSpeciesInformation_1_1Impl.html#a219fbcef554ce8d99265d545825c18dc", null ]
 ];
diff --git a/navtreeindex3.js b/navtreeindex3.js
@@ -9,15 +9,15 @@ var NAVTREEINDEX3 =
 "classSpeciesInformation.html#a8e46a5b4955a5164dbc6703fd7a86eb4":[12,122,2],
 "classSpeciesInformation.html#af77dd55f79155df4dab9bf490d900a07":[12,122,1],
 "classSpeciesInformation_1_1Impl.html":[12,122,0],
-"classSpeciesInformation_1_1Impl.html#a0cee25bda8e8c98cb2e4f6b1f1bdfbaa":[12,122,0,5],
+"classSpeciesInformation_1_1Impl.html#a0eb655bf420dc3a05d2cbb1e176cf279":[12,122,0,6],
 "classSpeciesInformation_1_1Impl.html#a219fbcef554ce8d99265d545825c18dc":[12,122,0,8],
-"classSpeciesInformation_1_1Impl.html#a22075762bac76656386615ff21f71bd8":[12,122,0,4],
-"classSpeciesInformation_1_1Impl.html#a3bf40fa531902e47b82ce46109df9259":[12,122,0,7],
-"classSpeciesInformation_1_1Impl.html#a447bc6c55e4a471376bfdfcbd04db742":[12,122,0,6],
+"classSpeciesInformation_1_1Impl.html#a6fa19e2bcac84772f4de38323e4430e3":[12,122,0,4],
 "classSpeciesInformation_1_1Impl.html#a788f54c43e25317f947aa8be9716c3bc":[12,122,0,1],
 "classSpeciesInformation_1_1Impl.html#a79dd22b07e0b671a5f85b7a1d47c10a4":[12,122,0,0],
+"classSpeciesInformation_1_1Impl.html#a926e1d36257535d9c850fadd85f45dd2":[12,122,0,2],
+"classSpeciesInformation_1_1Impl.html#ab5fea032a19715a668e86acfa0a4e93a":[12,122,0,5],
 "classSpeciesInformation_1_1Impl.html#ad069f5667f3d88ab36856bd941c6e937":[12,122,0,3],
-"classSpeciesInformation_1_1Impl.html#aee061508e334dfda1ec99068b18d8909":[12,122,0,2],
+"classSpeciesInformation_1_1Impl.html#aeaa6f310ad69c7e977214d455bb9a039":[12,122,0,7],
 "classSplineBoundaryValue.html":[12,123],
 "classSplineBoundaryValue.html#a772793f39da3ff86099ca45d56d3a4b6":[12,123,1],
 "classSplineBoundaryValue.html#ab8c255bfff4881701559b44dbe568db1":[12,123,0],