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A viral genome reconstruction tool from metagenomic and metatranscriptomic sequencing data.

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META_VRL

A SARS-CoV-2 genome reconstruction and SNV calling tool from metagenomic and metatranscriptomic sequencing data.

Three pipelines exist:

meta_vrl_short_denovo

Construct contig sequences from Illumina paired-end fastq files.

meta_vrl_short_map

Consensus sequence generation and SNV calling from Illumina paired-end fastq files.

meta_vrl_long_map

Consensus sequence generation and SNV calling from Oxford Nanopore fast5 and fastp files.

All of three pipeline can be used in NIG supercomputer https://sc.ddbj.nig.ac.jp/en?set_language=en

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A viral genome reconstruction tool from metagenomic and metatranscriptomic sequencing data.

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