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1.3.0
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@hartleys hartleys released this 01 Nov 17:13
· 1 commit to master since this release
1.3.0
39cd1fc

New stable release.

Minor changes and updates.

  • Updated the scala libraries to 1.22.4 in order to solve a discovered bug in the AnyRefMap collection class (see here). This may have caused random crashes when attempting to calculate reference mismatch rates and processing certain reads. Crashes would be expected to occur roughly once every 4 billion read-pairs.
  • Added an option to allow downsampling of bam files when generating wiggle files. The downsampling is fairly memory intensive, and there are probably better ways to do this. But it's fast.
  • Removed methods that are deprecated in scala v1.22. (specifically scala.collection.JavaConversions)
  • Minor documentation fixes.
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