adding pthread.h and minor typo fixes

hasindu2008 · Jan 21, 2025 · 11f86b7 · 11f86b7
1 parent 3c921e0
commit 11f86b7
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/src/f5c.cu b/src/f5c.cu
@@ -11,6 +11,7 @@
 #include <stdlib.h>
 #include <string.h>
 #include <assert.h>
+#include <pthread.h>
 
 #include "error.h"
 #include "f5c.h"

diff --git a/src/fast5lite.h b/src/fast5lite.h
@@ -465,28 +465,28 @@ static inline std::string fast5_get_read_id_single_fast5(fast5_file_t fh)
 #else
 
 static inline fast5_file_t fast5_open(char* filename) {
-    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. s2f unavailable. Recompile with FAST5/HDF5 support.");
+    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. FAST5 reading unavailable. Recompile with FAST5/HDF5 support.");
     exit(EXIT_FAILURE);
 }
 
 static inline int32_t fast5_read(fast5_file_t fh, signal_t* sig, std::string read_id){
-    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. s2f unavailable. Recompile with FAST5/HDF5 support.");
+    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. FAST5 reading  unavailable. Recompile with FAST5/HDF5 support.");
     exit(EXIT_FAILURE);
 }
 
 static inline void fast5_close(fast5_file_t fh) {
-    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. s2f unavailable. Recompile with FAST5/HDF5 support.");
+    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. FAST5 reading  unavailable. Recompile with FAST5/HDF5 support.");
     exit(EXIT_FAILURE);
 }
 
 static inline std::string fast5_get_read_id_single_fast5(fast5_file_t fh){
-    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. s2f unavailable. Recompile with FAST5/HDF5 support.");
+    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. FAST5 reading  unavailable. Recompile with FAST5/HDF5 support.");
     exit(EXIT_FAILURE);
 }
 
 #include <vector>
 static inline std::vector<std::string> fast5_get_multi_read_groups(fast5_file_t fh){
-    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. s2f unavailable. Recompile with FAST5/HDF5 support.");
+    ERROR("%s", "f5c has been compiled with no FAST5/HDF5 support. FAST5 reading  unavailable. Recompile with FAST5/HDF5 support.");
     exit(EXIT_FAILURE);
 }