do make pyslow5 inside venv

python/README.md

@@ -79,7 +79,7 @@ git clone [email protected]:hasindu2008/slow5lib.git
 cd slow5lib
 make
 
-# CHOOSE A OR B:  
+# CHOOSE A OR B:
 # (B is the cleanest method)
 # |=======================================================================|
 # |A. Install with pip if wheel is present, otherwise it uses setuptools  |

python/pytest.sh

@@ -16,10 +16,11 @@ make clean
 rm -f dist/* valgrind.log
 test -d ./venv && rm -r ./venv
 
-make pyslow5 || die "make pyslow5 failed"
+
 ${PYTHON} -m venv ./venv || die "Failed to create virtual environment"
 source ./venv/bin/activate || die "Failed to activate virtual environment"
 pip install --upgrade pip wheel numpy || die "Failed to update pip"
+make pyslow5 || die "make pyslow5 failed"
 pip install dist/*.tar.gz
 python3 python/example.py || die "Failed to run example.py"
 python3 -m unittest -v python/test.py || die "Failed to run test.py"

python/valgrind-python.supp

@@ -544,6 +544,7 @@
    Suppress leaking the _PyEval_EvalFrameDefault
    Memcheck:Leak
    fun:malloc
+   fun:_PyObject_GC_NewVar
    ...
    fun:_PyEval_EvalFrameDefault
 }