Minor housekeeping updates

[rly]

Motivation

• Update ruff action to non-deprecated one
• Update github-app-token action to official github one
• Remove requirements-min.txt in favor of an optional dependency group in pyproject.toml and update docs accordingly
• Update pyproject.toml license key to correct format
• Add back ruff mccabe complexity check which was accidentally removed in transition to ruff
• Clean up ruff config

How to test the behavior?

Show how to reproduce the new behavior (can be a bug fix or a new feature)

Checklist

• Did you update CHANGELOG.md with your changes?
• Does the PR clearly describe the problem and the solution?
• Have you reviewed our Contributing Guide?
• Does the PR use "Fix #XXX" notation to tell GitHub to close the relevant issue numbered XXX when the PR is merged?

[codecov]

Codecov Report

Attention: Patch coverage is 85.50725% with 10 lines in your changes missing coverage. Please review.

Project coverage is 90.95%. Comparing base (b8a1a26) to head (722a772).

Files with missing lines	Patch %	Lines
src/hdmf/spec/spec.py	66.66%	4 Missing and 3 partials ⚠️
src/hdmf/common/resources.py	90.32%	2 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##              dev    #1246      +/-   ##
==========================================
+ Coverage   90.87%   90.95%   +0.08%     
==========================================
  Files          42       42              
  Lines        9537     9535       -2     
  Branches     1926     1918       -8     
==========================================
+ Hits         8667     8673       +6     
+ Misses        576      570       -6     
+ Partials      294      292       -2     

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